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"Tomato"

Research Articles

Beyond Productivity: CRISPR-Based Genome Editing for High-Value and Well-being Tomato Production
Minuk Kim, Shandra Amarillis, Md. Mahfuzur Rahman Sabbir, Tran Minh Duc, Akram Javeed, A-ra Joh, Soon Ju Park
Plant Breed. Biotech. 2026;14:152-164.
Published online June 10, 2026
DOI: https://doi.org/10.9787/PBB.2026.14.152

Tomato (Solanum lycopersicum) is a premier global crop, celebrated not only for its economic importance but also as a fundamental “well-being food” that provides essential vitamins, minerals, and potent antioxidants. This review highlights the transformative impact of CRISPR/Cas9 and next-generation precision tools, such as base and prime editing, on modern tomato breeding. Beyond functional genomics, we focus on the strategic engineering of tomato to maximize productivity through fruit size optimization and the biofortification of high-value metabolites (e.g., GABA, lycopene, and vitamins). Furthermore, we examine recent advances in developing multi-stress resilience against both biotic and abiotic challenges. A significant emphasis is placed on re-designing plant architecture and developmental traits to tailor tomato varieties for future agricultural systems, particularly indoor and vertical farming. By advanced delivery methods, CRISPR technologies offer unprecedented potential to accelerate the development of “smart” tomato, ensuring sustainable agriculture and global food security in a changing climate.

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Tomato Yield Effects of Reciprocal Hybridization of Solanum lycopersicum Cultivars M82 and Micro-Tom
Sujeevan Rajendran, Jong Hyang Bae, Min Woo Park, Jae Hyun Oh, Hwang Weon Jeong, Young Koung Lee, Soon Ju Park
Plant Breed. Biotech. 2022;10(1):37-48.   Published online March 28, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.1.37

Plant breeders have accumulated hybrid effects to increase food production in order to counteract the loss of arable land. Hybrids may possess novel genetic potential to increase agricultural productivity; however, the relationships between genetic resources for optimizing crop productivity remain mostly unclear. In this study, we recorded heterosis effects of genetically inherited traits by reciprocal hybridization of the Solanum lycopersicum cultivar Micro-Tom and the commercial cultivar M82, which are currently available as in silico mutant populations, to identify mutant genes which can induce heterosis. The genetic variations between M82 and Micro-Tom caused intermediate phenotypic effects with regard to flowering time, plant height, and fruit size, indicating additive interactions among variations with a hybrid background. The total yield of F1 hybrid was similar to that of cultivar M82, regardless of reduced vegetative biomass, and it revealed an overdominance effect regarding number of harvested fruits. The inheritance of the phenotypes was similar among reciprocal F1 hybrids with different paternal and maternal materials. Based on the consistency of hybrids and wild types, Micro-Tom mutants showing floral homeotic defects and large plant size can be efficiently screened for overdominant yield mutants in F1 hybrids. Therefore, we suggest that identical traits in reciprocal hybrids between Micro-Tom and M82 varieties are useful as control F1 hybrids to improve field tomato productivity by screening mutant hybrids of Micro-Tom mutants and commercial variety M82.

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  • Introgression of dwarfing genes into tomato fruit through backcrossing aiming at salad-type background
    Thúlio P. Mattos, Gabriel M. Maciel, Camila S. de Oliveira, Ana L. A. Ribeiro, Ana C. S. Siquieroli, Nilo C. Q. Silva, Orlando R. de Oliveira, Vinicius A. Pereira
    Revista Caatinga.2025;[Epub]     CrossRef
  • Enhancing fruit quality and stress resilience: Genetic advancements in dwarf tomato populations
    Thúlio Pereira Mattos, Gabriel Mascarenhas Maciel, Ana Luisa Alves Ribeiro, Camila Soares de Oliveira, Ana Carolina Silva Siquieroli, Nilo Cesar Queiroga Silva, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara
    Acta Scientiarum. Agronomy.2025; 47(1): e72614.     CrossRef
  • Unraveling novel mechanisms controlling heterosis in seeds: advances and biotechnological applications in crops
    Sara Belcapo, Elise Réthoré, Eric Nguema-Ona, Ignacio Ezquer, Rainer Melzer
    Journal of Experimental Botany.2025; 76(22): 6619.     CrossRef
  • Small and strong: Dwarf cultivars as a strategic response to shade avoidance syndrome through molecular, hormonal, and breeding innovations
    Sujeevan Rajendran, Su Min Chun, Yu Mi Kang, Gyu Hun Hwang, Do Hyun Lee, Sang‐Hoon Lee, Bumkyu Lee, Ho Cheol Kim, Jong Hyang Bae, Chul Min Kim
    Agronomy Journal.2025;[Epub]     CrossRef
  • Light quality and intensity modulation on yield and quality on crops grown in vertical farms
    A. Ferrante, S. Toscano, D. Romano
    European Journal of Horticultural Science.2024; 89(5): 1.     CrossRef
  • New insights into the use of dwarf tomato plants for pest resistance
    Gabriel Mascarenhas Maciel, Camila Soares de Oliveira, Ana Carolina Silva Siquieroli, Lucas Medeiros Pereira, Ana Luisa Alves Ribeiro, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara, Nilo Cesar Queiroga Silva, Ana Karoline Silva Rocha de Farias
    Bragantia.2024;[Epub]     CrossRef
  • Saladette-type dwarf tomato introgression lines with agronomic potential, improved fruit quality, and biotic stress tolerance
    Camila Soares de Oliveira, Gabriel Mascarenhas Maciel, Ana Carolina Silva Siquieroli, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara, Lucas Medeiros Pereira
    Ciência e Agrotecnologia.2024;[Epub]     CrossRef
  • Additional Advantages for Agronomic Performance and Fruit Quality in Tomato Hybrids of the Saladette Type Derived from a Dwarf Male Parent
    Lucas Medeiros Pereira, Gabriel Mascarenhas Maciel, Ana Carolina Silva Siquieroli, Ana Luisa Alves Ribeiro, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara, José Magno Queiroz Luz, Rickey Yoshio Yada, Camila Soares de Oliveira
    Horticulturae.2024; 10(11): 1145.     CrossRef
  • Heterosis in horticultural crop breeding: combining old theoretical bases with modern genomic views
    Silvia Farinati, Francesco Scariolo, Fabio Palumbo, Alessandro Vannozzi, Gianni Barcaccia, Margherita Lucchin
    Frontiers in Horticulture.2023;[Epub]     CrossRef
  • Studies on the Molecular Basis of Heterosis in Arabidopsis thaliana and Vegetable Crops
    Saaya Shiraki, Kazumasa Fujiwara, Yoshiki Kamiya, Mst. Arjina Akter, Elizabeth S. Dennis, Ryo Fujimoto, Hasan Mehraj
    Horticulturae.2023; 9(3): 366.     CrossRef
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Development of a Mutant Population of Micro-Tom Tomato Using Gamma-Irradiation
Jae-In Chun, Heejin Kim, Yeong Deuk Jo, Jin-Baek Kim, Jin-Ho Kang
Plant Breed. Biotech. 2020;8(4):307-315.   Published online December 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.4.307

Knowledge of genetic resources is essential for breeders to create new crop varieties with improved characteristics. In this respect, mutant populations may conveniently provide a powerful tool for identifying new functional genes. Therefore, we used the Micro-Tom tomato variety, which has a reduced size and a relatively short life-cycle compared to other commercial tomato cultivars, to construct a mutant population using gamma-ray radiation as a mutagen. To determine the optimal mutagenic intensity of gamma rays for tomato, dry seeds of Micro-Tom were irradiated with gamma-ray intensities from 0 to 1000 gray (Gy) with increments of 100 Gy. The germination rate of mutagenized seeds (M1 seeds) on MS media was not affected by the tested gamma-ray intensity range. However, seedling growth was severely reduced with increasing irradiation. Seedling growth rate at eight days after germination showed that the median gamma-ray doses for hypocotyl and root elongation were 600 and 300-400 Gy, respectively. The survival test for 300, 400, and 500 Gy-treated M1 seeds showed that survival rates significantly decreased with increasing irradiation. The survival rate of 400 Gy-radiated seeds was 48%, while that of 500 Gy-radiated seeds was only 25%, compared with the control treatment. Therefore, we concluded that gamma-ray irradiation at 300-400 Gy is best for tomato mutagenesis. To find new mutants, M2 seeds produced by M1 plants were grown. We found several mutants, including plants with varying cotyledon number, variegated or red leaves, and green hypocotyls.

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  • Gamma rays and sodium azide induced variations in bio-physiological and agronomical traits in linseed (Linum usitatissimum L.)
    Roshan Jahan, Aamir Raina, Saima Malik, Samiullah Khan
    Heliyon.2024; 10(11): e31329.     CrossRef
  • Mutation mapping of a variegated EMS tomato reveals an FtsH-like protein precursor potentially causing patches of four phenotype classes in the leaves with distinctive internal morphology
    Punyavee Dechkrong, Sornsawan Srima, Siriphan Sukkhaeng, Winai Utkhao, Piyanan Thanomchat, Hans de Jong, Pumipat Tongyoo
    BMC Plant Biology.2024;[Epub]     CrossRef
  • Effect of Gamma Irradiation on Survival, Fruit Characteristic, and Thorn Length in Different Varieties of Citrus
    Cheol-Woo Choi, Min-Ju Kim, Seong-beom Jin, Suk-Man Park, Su-Hyun Yun
    Korean Journal of Breeding Science.2023; 55(4): 296.     CrossRef
  • Radiosensitivity of seedling traits to varying gamma doses, optimum dose determination and variation in determined doses due to different time of sowings after irradiation and methods of irradiation in faba bean genotypes
    Rajdeep Guha Mallick, Subhradeep Pramanik, Manas Kumar Pandit, Akhilesh Kumar Gupta, Subhrajit Roy, Sanjay Jambhulkar, Ashutosh Sarker, Rajib Nath, Somnath Bhattacharyya
    International Journal of Radiation Biology.2023; 99(3): 534.     CrossRef
  • Mutagenesis-based plant breeding approaches and genome engineering: A review focused on tomato
    Durre Shahwar, Namju Ahn, Donghyun Kim, Wooseong Ahn, Younghoon Park
    Mutation Research - Reviews in Mutation Research.2023; 792: 108473.     CrossRef
  • Radiation treatment to turfgrass cultivar to improve drought tolerance cultivar breeding
    Gyung Deok Han, Ji Hyeon Jung, Hyeon-Jin Sun, Yong Suk Chung
    Plant Biotechnology Reports.2022; 16(4): 493.     CrossRef
  • Chronic Gamma Irradiation Changes Phenotype and Gene Expression Partially Transmitted to Next-Generation Tomato Seedlings
    Seong-Min Kim, Yeong Deuk Jo, Jae-In Chun, Jin-Baek Kim, Jin-Ho Kang
    Agronomy.2021; 11(8): 1638.     CrossRef
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Traits Affecting Low Temperature Tolerance in Tomato and Its Application to Breeding Program
Rajametov Sherzod, Eun Young Yang, Myeong Cheoul Cho, Soo Young Chae, Jeong Ho Kim, Chun Woo Nam, Won Byoung Chae
Plant Breed. Biotech. 2019;7(4):350-359.   Published online December 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.4.350

It is essential to develop tomato (Solanum lycopersicum L.) cultivars with tolerance to low temperature (LT) for reducing production cost and increasing fruit quality in winter. This study was conducted to investigate the effects of LT on 40 tomato accessions for establishing selection criteria to select accessions with LT tolerance. Tomato plants were grown in two polyethylene film greenhouses with night temperature set-points of 10℃ and 15℃. LT significantly affected the photosynthetic parameters as well as both vegetative and reproductive growth in tomato. There was a significant difference in plant height between plants grown in 10℃ and 15℃. Leaf length and width were also significantly lower in 10℃. The stem diameter was generally lower in 10℃ but 12 accessions in 10℃ had thicker stem diameter than those in 15℃. The retarded growth was due to lower photosynthetic rate in 10℃ than 15℃. Significant delay in flowering was observed among tomato accessions in 10℃. For the number of flowers, 62.5% showed the increase but 37.5% did the decrease in 10℃ among 40 tomato accessions, showing genotype specific interaction with LT. Accessions with small fruits showed reduced fruit set in 10℃; however, it was not obvious among accessions with large fruits. Interestingly, 75% of accessions showed increased chlorophyll contents in 10℃ compared to 15℃. An accession ‘VI037163’ was selected for LT tolerance based on good performance in six out of seven traits considered such as plant height, leaf length, stem diameter, chlorophyll contents, days to flowering, the number of flowers and fruit set.

Citations

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  • Trichoderma asperellum Enhances Low-Temperature Tolerance of Tomato Plants by Regulating Oxidative Stress, Osmolyte Accumulation, and Stomatal Traits
    María del Pilar Osorno-Suárez, Iridiam Hernández-Soto, Eliazar Aquino-Torres, Ma Isabel Reyes-Santamaría, Alfredo Madariaga-Navarrete, Diana Sánchez-Rangel, Mariana Saucedo-García
    Horticulturae.2025; 11(12): 1502.     CrossRef
  • Recent Insights into the Physio-Biochemical and Molecular Mechanisms of Low Temperature Stress in Tomato
    Kwanuk Lee, Hunseung Kang
    Plants.2024; 13(19): 2715.     CrossRef
  • Intraspecific variation in responses to extreme and moderate temperature stress in the wild species, Solanum carolinense (Solanaceae)
    Emma K Chandler, Steven E Travers, Silvia Matesanz
    AoB PLANTS.2024;[Epub]     CrossRef
  • Multivariate analysis of garlic (Allium sativum L.) germplasm in response to cold tolerance regimes
    Jalil Ahmad, Haiping Wang, Jiangping Song, Shamim Umer, Xiaohui Zhang, Wenlong Yang, Xixiang Li
    Crop Design.2023; 2(2): 100042.     CrossRef
  • Identification of Key Regulatory Factors of Molecular Marker TGS377 on Chromosome 1 and Its Response to Cold Stress in Tomato
    Jia-Qi Zhang, Jian-Ping Tao, Liu-Xia Song, Rong-Rong Zhang, Hui Liu, Tong-Min Zhao, Wei-Min Zhu, Ai-Sheng Xiong
    Agronomy.2022; 12(12): 2985.     CrossRef
  • Physiological Traits of Thirty-Five Tomato Accessions in Response to Low Temperature
    Sherzod Nigmatullayevich Rajametov, Kwanuk Lee, Hyo-Bong Jeong, Myeong-Cheoul Cho, Chun-Woo Nam, Eun-Young Yang
    Agriculture.2021; 11(8): 792.     CrossRef
  • Factors Affecting Tolerance to Low Night Temperature Differ by Fruit Types in Tomato
    Eun-Young Yang, Sherzod Nigmatullayevich Rajametov, Myeong-Cheoul Cho, Hyo-Bong Jeong, Won-Byoung Chae
    Agriculture.2021; 11(7): 681.     CrossRef
  • The Effect of Night Low Temperature on Agronomical Traits of Thirty-Nine Pepper Accessions (Capsicum annuum L.)
    Sherzod Nigmatullayevich Rajametov, Kwanuk Lee, Hyo-Bong Jeong, Myeong-Cheoul Cho, Chun-Woo Nam, Eun-Young Yang
    Agronomy.2021; 11(10): 1986.     CrossRef
  • Heat Treatment in Two Tomato Cultivars: A Study of the Effect on Physiological and Growth Recovery
    Sherzod Nigmatullaevich Rajametov, Eun Young Yang, Hyo Bong Jeong, Myeong Cheoul Cho, Soo Young Chae, Niroj Paudel
    Horticulturae.2021; 7(5): 119.     CrossRef
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Differential Expression Pattern of Lignin Biosynthetic Genes in Dwarf Cherry Tomato (Solanum lycopersicum var. cerasiforme)
Md Abdur Rahim, AKM Zilani Rabbi, Khandker Shazia Afrin, Hee-Jeong Jung, Hoy-Taek Kim, Jong-In Park, Ill-Sup Nou
Plant Breed. Biotech. 2019;7(3):229-236.   Published online September 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.3.229

Cherry tomatoes are highly nutritious, flavory with a pleasant taste and are becoming increasingly popular to the consumers. The cherry tomato cv. ‘Minichal’ produced some dwarf plants along with normal plants. Lignin, a phenolic biopolymer is the key component of cell walls in plants. Here, we analyzed lignin biosynthesis-related genes in leaves, inflorescences and fruits of dwarf and normal cherry tomato plants by reverse-transcription quantitative PCR (RT-qPCR). Among analyzed genes, SlCCOAOMT1, SlCCOAOMT2, SlCCOAOMT3, SlF5H, and SlCOMT showed significantly higher expressions, in leaf and inflorescence of dwarf plants compared with the normal plants, while SlPAL1 showed a significantly higher expression only in the leaves. On the contrary, SlHCT and SlC3H showed significantly lower expression levels in the leaves and inflorescences of dwarf plants compared with normal ones. The results suggest that SlHCT and SlC3H might have an impact on the dwarf cherry tomato plants.

Citations

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  • Joint Impacts of Meloidogyne incognita and Soil Nutrition on Solanum lycopersicum var. cerasiforme
    Lei Wang, Xingfu Yan, Zhanhui Tang
    Plant Disease.2024; 108(5): 1252.     CrossRef
  • A response of biomass and nutrient allocation to the combined effects of soil nutrient, arbuscular mycorrhizal, and root-knot nematode in cherry tomato
    Lei Wang, Xin Chen, Xingfu Yan, Congli Wang, Pingting Guan, Zhanhui Tang
    Frontiers in Ecology and Evolution.2023;[Epub]     CrossRef
  • Nutrients Regulate the Effects of Arbuscular Mycorrhizal Fungi on the Growth and Reproduction of Cherry Tomato
    Lei Wang, Xin Chen, Yeqin Du, Di Zhang, Zhanhui Tang
    Frontiers in Microbiology.2022;[Epub]     CrossRef
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Review Article

How Durable is Root Knot Nematode Resistance in Tomato?
M. Harunur Rashid, M. H. Al-Mamun, M. Nazim Uddin
Plant Breed. Biotech. 2017;5(3):143-162.   Published online September 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.3.143

Among the plant parasitic nematodes, root knot nematode (RKN) is the most devastating in tomato growing regions. Controlling RKN mostly relies on nematicides. Since chemical application is limited due to adverse environmental effect, alternative approaches are required. Although there are some alternatives, but resistance cultivars are getting popularity in the farmer’s field because of simplicity, cost-effective and environment safety. Genes conferring resistance to RKN have already been identified followed by the introgression into elite cultivars. Currently, natural resistance genes (R genes) are used in conventional breeding programmes. Simultaneously, molecular research is going on to characterize and map the linked markers for the detected resistant phenotypes. Currently, it is a prominent threat to maintain the durability of existing R genes. However, durability of host resistance govern by co-evolution of resistance genes from plants and (a)virulence genes from nematodes. So, understanding the mechanisms underlying co-evolution is essential for the durability of R genes. Here we review the existing potential natural resistance in tomato against RKN, currently used resistance mechanisms between RKN and tomato, influential factors of durability of natural resistance genes and opportunity to get more durable resistance in tomato.

Citations

Citations to this article as recorded by  
  • Emerging Threat of Meloidogyne enterolobii: Pathogenicity Mechanisms and Sustainable Management Strategies in the Context of Global Change
    Mingming Shi, Rui Liu, D. U. Nilunda Madhusanka, Yonggang Liu, Ning Luo, Wei Guo, Jianlong Zhao, Huixia Li, Zhenchuan Mao
    Microbiology Research.2025; 16(8): 165.     CrossRef
  • Grafting Tomato Scions on Root Knot Nematode (RKN)-Resistant Brinjal Rootstocks Complemented with Biocontrol Agents as an Integrated Nematode Management (INM) Strategy for the Development of RKN-Resistant Tomato
    Anil K. Poonia, Bhupendra Koul, Subhash Kajla, Meerambika Mishra, Muhammad Fazle Rabbee
    Pathogens.2025; 14(12): 1257.     CrossRef
  • Metabolomics and histopathological analysis of two tomato cultivars after co-infection with soil-borne pathogens (Southern root-knot nematode and Fusarium wilt fungus)
    Aatika Sikandar, Wenkai Rao, Heliang He, Bochang Chen, Xiongbiao Xu, Haiyan Wu
    Plant Physiology and Biochemistry.2024; 215: 108983.     CrossRef
  • Identification and characterization of a virulent population of Meloidogyne graminicola
    Hue Thi Nguyen, Seng Vang, Ngan Thi Phan, Pierre Czernic, Phap Quang Trinh, Cuong Viet Ha, Jamel Aribi, Anne-Sophie Masson, Malyna Suong, Stéphane Bellafiore
    Australasian Plant Pathology.2023; 52(5): 391.     CrossRef
  • Plant defense responses in monocotyledonous and dicotyledonous host plants during root-knot nematode infection
    Arnika Przybylska, Aleksandra Obrępalska-Stęplowska
    Plant and Soil.2020; 451(1-2): 239.     CrossRef
  • Tomato Natural Resistance Genes in Controlling the Root-Knot Nematode
    Ahmed H. El-Sappah, Islam M. M., Hamada H. El-awady, Shi Yan, Shiming Qi, Jingyi Liu, Guo-ting Cheng, Yan Liang
    Genes.2019; 10(11): 925.     CrossRef
  • Cucumis metuliferus reduces Meloidogyne incognita virulence against the Mi1.2 resistance gene in a tomato–melon rotation sequence
    Alejandro Expósito, Sergi García, Ariadna Giné, Nuria Escudero, Francisco Javier Sorribas
    Pest Management Science.2019; 75(7): 1902.     CrossRef
  • The possibility of transferring resistance genes Mi1.2 and Mi-3 by crossing between wild and susceptible tomato varieties
    Inad D. Abood, Sarah T. Hasan
    International Journal of Biosciences (IJB).2018; : 417.     CrossRef
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Research Articles

Chemical Constitutions and Antioxidant Activities of Tomato Leaf Extracts
Kyung Jun Lee, Gi-An Lee, Kyung-Ho Ma, Sebastin Raveendar, Yang-Hee Cho, Jung-Ro Lee, Jong-Wook Chung
Plant Breed. Biotech. 2016;4(3):362-372.   Published online August 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.3.362

The present study aimed to determine the contents of five flavonols and two glycoalkaloids as well as the antioxidant activities of leaf ethanol extracts of 50 tomato accessions. The antioxidant activity was assessed using different tests: 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulphonic acid) (ABTS), 2,2-diphenyl-1-picryl hydrazyl (DPPH), nitric oxide (NO), and total polyphenol content (TPC). Flavonols and glycoalkaloids contents were determined using a high performance liquid chromatography-diode array detector system. Among five flavonols and two glycoalkaloids, naringenin and tomatine were detected in tomato leaves at high concentrations. Of the 50 tomato accessions, IT 229711, IT2365203, and IT 207224 were found to have the highest contents of quercetin, kaempferol, and tomatine, respectively. Leaf extract of IT189949 exhibited the highest relative antioxidant capacity index (RACI). Among the five flavonols, myricetin showed positive correlations with DPPH, ABTS, and NO, while isorhamnetin had positive correlation with DPPH. These results will expand the chemical constitution database and provide information on tomato leaves. They are valuable for the development of functional foods or feed-additives.

Citations

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  • Protective role of α-tomatine against oxidative stress induced reactive oxygen species: In vitro radical scavenging assays

    International Journal of Biosciences (IJB).2025; : 123.     CrossRef
  • Genetic Response of Solanum lycopersicum L. (Tomato) to Phytophthora infestans and Aspergillus niger
    Tavershima Moses Anakaa, Odunayo Joseph Olawuyi, Segun Gbolagade Jonathan
    International Journal of Plant Biology.2025; 16(1): 35.     CrossRef
  • Extracts of tomatoes and potatoes as biopesticides: a review
    Joshua Ibukun Adebomi, Jianfeng Guo, Catherine Hui Niu
    Discover Agriculture.2025;[Epub]     CrossRef
  • Solanaceae Leaves as are Sources of Antioxidants and Vitamin D
    Ekaterina Borodina, Oksana Kozlova, Veronika Boger, Larisa Proskuryakova, Vladimir Yustratov
    Food Processing: Techniques and Technology.2025; 55(1): 197.     CrossRef
  • Bioformulation development via valorizing silica-rich spent mushroom substrate with Trichoderma asperellum for plant nutrient and disease management
    Garima Singh, Abhay Tiwari, Akansha Gupta, Ashwani Kumar, P. Hariprasad, Satyawati Sharma
    Journal of Environmental Management.2021; 297: 113278.     CrossRef
  • Acute and Subacute Toxicity Profiles of the Methanol Extract of Lycopersicon esculentum L. Leaves (Tomato), a Botanical with Promising In Vitro Anticancer Potential
    Gaëlle S. Nguenang, Arsène S. M. Ntyam, Victor Kuete, Armando Zarrelli
    Evidence-Based Complementary and Alternative Medicine.2020;[Epub]     CrossRef
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Genetic Diversity and Population Structure of Asian Tomato Accessions Based on Simple-Sequence Repeats
Sebastin Raveendar, Jong-Wook Chung, Gi-An Lee, Jung-Ro Lee, Kyung-Jun Lee, Myoung-Jae Shin, Yang-Hee Cho, Kyung-Ho Ma
Plant Breed. Biotech. 2016;4(3):306-314.   Published online August 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.3.306

Tomato (Solanum lycopersicum L.) is one of the most economically important plants in the family Solanaceae. Understanding its genetic diversity of accessions is vital for additional collection of tomato germplasms. The
objective
of this study was to determine the genetic diversity and population structure of 355 tomato accessions from Asia using 18 simple-sequence repeats (SSRs). A total of 176 alleles were detected at an average of ten alleles per SSR locus. The average major allele frequency and polymorphic information content were 0.69 and 0.39, respectively. Model-based structure analysis revealed two subpopulations (88%), including admixtures (11%) in the 355 Asian tomato accessions, consistent with clustering results based on genetic distance. The overall FST value was 0.135, indicating a moderate differentiation between the inferred subpopulations. Analysis of molecular variance showed that the genetic variance among geographical groups was less than 6%, in contrast to 86% of genetic variance among individuals. The results from this study will provide important information for future germplasm conservation and improvement programs for tomato.

Citations

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  • Next generation sequencing technologies to explore the diversity of germplasm resources: Achievements and trends in tomato
    Pasquale Tripodi
    Computational and Structural Biotechnology Journal.2022; 20: 6250.     CrossRef
  • Genetic diversity, population structure and validation of SSR markers linked to Sw-5 and I-2 genes in tomato germplasm
    Saidaiah Pidigam, Vishnukiran Thuraga, Suchandranath Babu Munnam, Geetha Amarapalli, Gopal Kuraba, Someswara Rao Pandravada, Srinivas Nimmarajula, Hari Kishan Sudini
    Physiology and Molecular Biology of Plants.2021; 27(8): 1695.     CrossRef
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Review Article

Molecular Markers for Selecting Diverse Disease Resistances in Tomato Breeding Programs
Je Min Lee, Chang-Sik Oh, Inhwa Yeam
Plant Breed. Biotech. 2015;3(4):308-322.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.308

Tomato (Solanum lycopersicum L.) is an economically important crop worldwide. In addition, tomato serves as an excellent model system for plant genetics and biology, including fruit biology, abiotic stress tolerance, and plant-microbe interactions. Development and practical use of molecular markers have been actively pursued in molecular breeding programs for tomato, especially for disease resistance to allow selection of a single resistance gene and combination of multiple resistance genes. Due to insufficient genetic variation in cultivated tomatoes, various wild relatives of tomato have been investigated and utilized as disease resistance sources. In order to pursue the resistance provided by these wild relatives in developing new tomato varieties, molecular markers have been developed and intensively utilized in tomato breeding programs. In this review, we summarize the currently available molecular markers that confer resistance against major tomato diseases, including Tomato yellow leaf curl virus (TYLCV), Tomato spotted wilt virus (TSWV), Tomato mosaic virus (ToMV), verticillium wilt, fusarium wilt, late blight caused by Phytophthora infestans, leaf mold caused by Cladosporium fulvum, root-knot caused by Meloidogyne spp., bacterial spot caused by Xanthomonas spp., and bacterial speck caused by Pseudomonas syringae. The provided marker information is expected to contribute to development of marker-assisted selection for disease resistance and to exploration of novel genetic sources for a tomato breeding program.

Citations

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  • From Genetic Diversity to Genetic Gain: Molecular Approaches and Breeding Strategies in Tomato with Insights from Lithuanian Germplasm
    Audrius Radzevičius, Danguolė Juškevičienė, Jonas Viškelis, Rasa Karklelienė
    International Journal of Molecular Sciences.2026; 27(12): 5433.     CrossRef
  • Molecular screening of wild and cultivated tomato germplasm reveals potential materials for multi-locus disease resistance breeding
    Ehtisham Hussain, Chien-yu Cheng, I-min Huang, Chen-yu Lin, Samrin Gul, Ijaz Rasool Noorka, Assaf Eybishitz, Chutchamas Kanchana-udomkan, Maarten van Zonneveld, Ya-ping Lin
    Genetic Resources and Crop Evolution.2025; 72(7): 8619.     CrossRef
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Research Articles
Transgenic Tomato Plants Ectopically Expressing BrRZFP1 Gene Encoding C3HC4-type RING Zinc Finger Protein
Yu-Jin Jung, Yong Gu Cho, Ill Sup Nou, Kwon Kyoo Kang
Plant Breed. Biotech. 2014;2(1):25-34.   Published online March 31, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.1.025

C3HC4-type RING zinc finger proteins are known to be essential in the regulation of plant processes, including responses to abiotic stress. In order to explore the potential of the BrRZFP1 gene to enhance tolerance toward multiple stresses in different host plant genomes, we generated transgenic tomato (Solanum lycopersicum L. cv. Goldenbell) plants. The tomato plants overexpressing BrRZFP1 acquired a higher tolerance to drought stress. However, the transgenic plants did not appear to be more cold tolerant than the WT, in any tested condition. The data obtained indicate that the specificity and the degree of BrRZFP1 activity depend on the host genomic background. In physiological assessment of salt stress tolerance, transgenic plants showed more dry matter accumulation and maintained significantly higher levels of leaf chlorophyll content along with increasing levels of salt stress than the wild type plants. This study shows that BrRZFP1 is a candidate gene in the engineering of crops for enhanced drought and salt stress tolerance.

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    Jeongsukhyeon Han, Senthil Kumar Thamilarasan, Sathishkumar Natarajan, Jong-In Park, Mi-Young Chung, Ill-Sup Nou, Xiang Jia Min
    PLOS ONE.2016; 11(9): e0161987.     CrossRef
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Variation in Antioxidant Activity and Polyphenol Content in Tomato Stems and Leaves
Xiang-Min Piao, Eun-Kyu Jang, Jong-Wook Chung, Gi-An Lee, Ho-Sun Lee, Jung-Sook Sung, Young-Ah Jeon, Jung-Ro Lee, Yeon-Gyu Kim, Sok-Young Lee
Plant Breed. Biotech. 2013;1(4):366-373.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.366

Tomato was considered as one of the most widely cultivated vegetable crops in the world. Tomato plant has high antioxidant capacity which can be attributed to the high levels of carotenoids, phenols, vitamins C and E. However, most of tomato plants have been discarded as waste after fruit harvesting. In order to identify genetic resources with high antioxidant level for use in food or as feed additives, we investigated the ABTS, DPPH antioxidant activity and polyphenol content in tomato leaves and stems. A total of 112 tomato accessions were classified into three groups by latitude of their collected countries: 30°~60° North (50 accessions), 0°~30° North (40 accessions), and 0°~30° South (22 accessions). Stem and leaf extracts showed wide variation in ABTS antioxidant activity ranging from 1.6 ± 1.0 to 48.4 ± 6.1 μg Trolox mg−1 dw. The antioxidant activity of DPPH was in the range of 6.3 ± 0.2 to 40.0 ± 0.3 μg ASC mg−1 dw. Total polyphenol content ranged from 6.1 ± 0.2 to 38.9 ± 0.7 μg GAE mg−1 dw. ABTS, DPPH antioxidant activities and polyphenol content in accessions from 30°~60°N latitude were significantly higher (P<0.05) than those from 0°~30°N latitude. ABTS values showed a significant positive correlation (r = 0.700**) with DPPH activity. IT100506 (KOR) and 702959 (UKR) were recommended as potential sources of natural antioxidants due to their highest antioxidant activity among accessions. This study will provide valuable information for tomato breeders in developing and producing functional food or feed additives resources.

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  • Flower Color and Seed Coat Color as a Phenotypic Marker: Correlations with Fatty Acid Composition, Antioxidant Properties, and Metabolite Profiles in Safflower (Carthamus tinctorius L.)
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    International Journal of Molecular Sciences.2025; 26(7): 3105.     CrossRef
  • Effect of Trichoderma harzianum against Fusarium oxysporum in resistant and susceptible tomato cultivars
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    Horticultural Science.2025; 52(2): 173.     CrossRef
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    Gyu-Mi An, Tae-Hwan Jung, Kyoung-Sik Han
    Applied Sciences.2024; 14(5): 1733.     CrossRef
  • Distinct Effects of Seed Coat and Flower Colors on Metabolite Contents and Antioxidant Activities in Safflower Seeds
    Weilan Li, Eunae Yoo, Jungsook Sung, Sookyeong Lee, Sojeong Hwang, Gi-An Lee
    Antioxidants.2023; 12(4): 961.     CrossRef
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  • Impact of Seasonal Consumption of Local Tomatoes on the Metabolism and Absorption of (Poly)Phenols in Fischer Rats
    Álvaro Cruz-Carrión, Luca Calani, Ma. Josefina Ruiz de Azua, Pedro Mena, Daniele Del Rio, Anna Arola-Arnal, Manuel Suárez
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    Kateřina Dadáková, Tereza Heinrichová, Jan Lochman, Tomáš Kašparovský
    Molecules.2020; 25(21): 4952.     CrossRef
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    Mohamed Ali Benabderrahim, Walid Elfalleh, Cengiz Sarikurkcu, Rabia Busra Sarikurkcu
    Industrial Crops and Products.2019; 141: 111772.     CrossRef
  • Variation in Fatty Acid Composition, Caffeic and Rosmarinic Acid Content, and Antioxidant Activity of Perilla Accessions
    Da Jeong Kim, Awraris Derbie Assefa, Yi Jin Jeong, Young Ah Jeon, Jae Eun Lee, Myeong Chul Lee, Ho Sun Lee, Ju Hee Rhee, Jung Sook Sung
    Korean Journal of Medicinal Crop Science.2019; 27(2): 96.     CrossRef
  • Assessing phenolic content and antioxidant potential diversity in Allium plants using multivariate data analysis
    Awraris Derbie Assefa, Yi-Jin Jeong, Da-Jeong Kim, Young-Ah Jeon, Jung-Ro Lee, Ho-Cheol Ko, Hyung-Jin Baek, Jung-Sook Sung
    Horticulture, Environment, and Biotechnology.2018; 59(5): 759.     CrossRef
  • Characterization, identification, and quantification of phenolic compounds using UPLC-Q-TOF-MS and evaluation of antioxidant activity of 73 Perilla frutescens accessions
    Awraris Derbie Assefa, Yi-Jin Jeong, Da-Jeong Kim, Young-Ah Jeon, Hyun-Choong Ok, Hyung-Jin Baek, Jung-Sook Sung
    Food Research International.2018; 111: 153.     CrossRef
  • Comparative analysis of total phenolic content and antioxidant activity of in vivo and in vitro grown plant parts of Carica papaya L.
    Neha Tiwari, Nidhi Srivastava, Vinay Sharma
    Indian Journal of Plant Physiology.2014; 19(4): 356.     CrossRef
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Transgenic Tomato Plants Expressing BrOAT1 gene from Brassica rapa var. SUN-3061 Show Enhanced Tolerance to Salt Stress
Yu Jin Jung, Ill Sup Nou, Kwon Kyoo Kang
Plant Breed. Biotech. 2013;1(1):70-79.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.070

Salt stress is by far the leading environmental stress limiting crop yields worldwide. Genetic engineering techniques hold great promise for developing crop cultivars with high tolerance to salt stress. In this study, the Brassica rapa var. SUN-3061 BrOAT1 gene was transferred into tomato through Agrobacterium-mediated leaf disc transformation. The transgenic status and transgene expression of the transgenic plants was confirmed by polymerase chain reaction (PCR) analysis and semi-quantitative one step RT-PCR analysis respectively. Subsequently, the growth status under salt stress, and physiological responses to salt stress of transgenic tomato were studied. The results showed that the transgenic plants exhibited better growth status under salt stress condition compared to the wild type plants. In physiological assessment of salt stress tolerance, transgenic plants showed more dry matter accumulation and maintained significantly higher levels of leaf chlorophyll content along with increasing levels of salt stress than the wild type plants. This study shows that BrOAT1 is a candidate gene in the engineering of crops for enhanced salt stress tolerance.

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  • Overexpression of OsDUF868.12 enhances salt tolerance in rice
    Hao Chen, Jiale Wan, Jiali Zhu, Ziyi Wang, Caiyao Mao, Wanjing Xu, Juan Yang, Yijuan Kong, Xiaofei Zan, Rongjun Chen, Jianqing Zhu, Zhengjun Xu, Lihua Li
    Frontiers in Plant Science.2025;[Epub]     CrossRef
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