Perilla species (Lamiaceae) have been used as a resource for oilseeds and vegetables, and medicinal purposes. Cytogenetic studies based on chromosomal composition are essential to understand the basic genome structure of a species and to provide vital information for crop improvements. However, only a few studies have assessed the cytogenetic aspects of Perilla species. Fluorescence in situ hybridization (FISH) karyotypes using 5S and 45S rDNA probes were analyzed for the wild and cultivated species of Perilla: P. citriodora and P. frutescens. Chromosome complements were diploid in P. citriodora and allotetraploid in P. frutescens. The chromosome length ranged from 3.07 to 4.92 μm and 2.41 to 5.73 μm in the diploid and allotetraploid variants, respectively. The karyotypic formula was 2n = 12m + 8sm (2 satellites) for P. citriodora and 2n = 20m + 20sm (2 satellites) for P. frutescens. A pair of 5S signals was detected in the telomeric region of chromosome pair 7, while a pair of 45S rDNA signals was detected in the telomeric region extending through the satellite region of chromosome 2 of P. citriodora. However, two pairs of 5S signals were detected from the interstitial to the telomeric regions of chromosome 7 and 17, and a pair of 45S rDNA signals was located on the satellite region of chromosome 20 of P. frutescens. This result will provide useful information to develop a breeding program and to construct the chromosomal backbone for the ongoing genome sequence assembly project.

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• Cytogenomic profiling of Panax ginseng cultivars and in vitro root cultures through multi-color PLOP-FISH and flow cytometry reveals somaclonal variations
  Eliazar A. Peniton Jr., Hong T. Nguyen, Nomar E. Waminal, Tae-Jin Yang, Hyun Hee Kim
  Journal of Ginseng Research.2026; 50(4): 101058.     CrossRef
• Cytogenomic evaluation of regenerated Aralia elata using PLOP-FISH and flow cytometry
  Eliazar Alumbro Peniton, Hong Thi Nguyen, Nomar Espinosa Waminal, Tae-Jin Yang, Hyun Hee Kim
  Scientific Reports.2024;[Epub]     CrossRef
• Comparative triple-color FISH mapping and genome size advances understanding of the cytogenetic diversity in wild Solanum species
  Hong Thi Nguyen, Soon Ju Park, Byung Yong Kang, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2023; 64(5): 811.     CrossRef
• Comparative FISH analysis of Senna tora tandem repeats revealed insights into the chromosome dynamics in Senna
  Thanh Dat Ta, Nomar Espinosa Waminal, Thi Hong Nguyen, Remnyl Joyce Pellerin, Hyun Hee Kim
  Genes & Genomics.2021; 43(3): 237.     CrossRef
• Comparative triple-color FISH mapping in eleven Senna species using rDNA and telomeric repeat probes
  Thi Hong Nguyen, Nomar Espinosa Waminal, Do Sin Lee, Remnyl Joyce Pellerin, Thanh Dat Ta, Nicole Bon Campomayor, Byung Yong Kang, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2021; 62(6): 927.     CrossRef
• FISH Karyotype Comparison ofPlatycodon grandiflorus(Jacq.) A. DC. ‘Jangbaek’ and Its Colchicine-Induced Tetraploid ‘Etteumbaek
  Eliazar Alumbro Peniton Jr., Yurry Um, Hyun Hee Kim
  Plant Breeding and Biotechnology.2020; 8(4): 389.     CrossRef

×Brassicoraphanus (AARR, 2n = 38) is a synthetic intergeneric allopolyploid between Brassica rapa L. ssp. pekinensis (AA, 2n = 20) and Raphanus sativus L. var. rafiphera (RR, 2n = 18). Abnormalities in meiosis are main causes for infertility, especially in recent intergeneric allopolyploids. Several ×Brassicoraphanus lines showing varied fertility rates were produced previously, but no cytogenetic data specifying the reasons for infertility have been reported. In this study, we performed cytogenetic analyses in BB4, BB6, BB12, and BB50 lines to evaluate their chromosomal composition and behavior during meiosis. The four lines had relatively small chromosomes, ranging in length from 1.82 to 5.72 μm. BB6, BB12, and BB50 have euploid chromosome number of 2n = 38, whereas BB4 is an aneuploid with 2n − 1 = 37. Fluorescent in situ hybridization karyotype analysis by using 5S/45S rDNA revealed 5/7, 6/7, 5/5 and 5/5 pairs in BB4, BB6, BB12 and BB50, respectively. Genomic in situ hybridization analysis on cells in prophase I revealed varying frequencies of tetravalent pairing and sticky, ring, rod, and laggard chromosomes across the lines, which were more abundant in BB4 and BB6. Unlike BB4 and BB6, both BB12 and BB50 are known to have relatively higher seed fertility and uniform plant morphology. The varied degrees of chromosomal pairing stability during meiosis could explain the different fertility rates among the four ×Brassicoraphanus lines in this study. These data might facilitate breeding programs of ×Brassicoraphanus and further cytogenomic analyses.

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• Exploration of incompatible crosses in plants for novel and useful variations
  Visarada Kurella B.R.S., Jinu Jacob, Kanti Meena, Deepika Cheruku, Sujatha Mulpuri
  Plant Breeding.2022; 141(5): 599.     CrossRef
• Subgenome Discrimination in Brassica and Raphanus Allopolyploids Using Microsatellites
  Nicole Bon Campomayor, Nomar Espinosa Waminal, Byung Yong Kang, Thi Hong Nguyen, Soo-Seong Lee, Jin Hoe Huh, Hyun Hee Kim
  Cells.2021; 10(9): 2358.     CrossRef

Repetitive DNA elements are ubiquitous in plant genomes. Although repeats provide relevant information for cytogenetic, evolutionary, and genomic studies, identifying and characterizing their sequence and chromosomal distribution are not always easily achieved through conventional methods. However, a high-throughput identification of genomic repeats can be obtained with short reads from next-generation sequencing data. Here, we identified the telomeric and two chromosome-specific repeats in Panax ginseng using low-coverage whole genome sequence data. The telomeric repeat sequence is same with the canonical angiosperm sequence, (TTTAGGG)_n, and localized mostly in every chromosome termini, except for an additional interstitial location in chromosome 10. A dinucleotide (GA) microsatellite, PgGA15, with total genome representation (GR) of more than 33 kb localized in the long arm of chromosome 20. An 11-bp minisatellite, Pgms1, with more than 58 kb of GR localized in the long arm of chromosome 1. This study provides chromosome-specific markers for cytogenetic studies in P. ginseng.

Citations

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• Beyond genome: Advanced omics progress of Panax ginseng
  Wenjing Yu, Siyuan Cai, Jiali Zhao, Shuhan Hu, Chen Zang, Jiang Xu, Lianghai Hu
  Plant Science.2024; 341: 112022.     CrossRef
• Identification and functional analysis of COLD-signaling-related genes in Panax ginseng
  Jeongeui Hong, Hojin Ryu
  Journal of Plant Biotechnology.2023;[Epub]     CrossRef
• Cell cycle synchronization in Panax ginseng roots for cytogenomics research
  Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Jin Yang, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2022; 63(1): 137.     CrossRef
• Gibberellin Signaling Promotes the Secondary Growth of Storage Roots in Panax ginseng
  Chang Pyo Hong, Jinsoo Kim, Jinsu Lee, Seung-il Yoo, Wonsil Bae, Kyoung Rok Geem, Jin Yu, Inbae Jang, Ick Hyun Jo, Hyunwoo Cho, Donghwan Shim, Hojin Ryu
  International Journal of Molecular Sciences.2021; 22(16): 8694.     CrossRef
• Functional characterization of gibberellin signaling-related genes in Panax ginseng
  Jinsoo Kim, Woo-Ri Shin, Yang-Hoon Kim, Donghwan Shim, Hojin Ryu
  Journal of Plant Biotechnology.2021; 48(3): 148.     CrossRef
• Interstitial Telomeric-like Repeats (ITR) in Seed Plants as Assessed by Molecular Cytogenetic Techniques: A Review
  Alexis J. Maravilla, Marcela Rosato, Josep A. Rosselló
  Plants.2021; 10(11): 2541.     CrossRef
• FISH Karyotype Comparison ofPlatycodon grandiflorus(Jacq.) A. DC. ‘Jangbaek’ and Its Colchicine-Induced Tetraploid ‘Etteumbaek
  Eliazar Alumbro Peniton Jr., Yurry Um, Hyun Hee Kim
  Plant Breeding and Biotechnology.2020; 8(4): 389.     CrossRef
• Five-color fluorescence in situ hybridization system for karyotyping of Panax ginseng
  Nomar Espinosa Waminal, Tae-Jin Yang, Jun-Gyo In, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2020; 61(5): 869.     CrossRef
• FISH Karyotype Comparison between Wild and CultivatedPerillaSpecies Using 5S and 45S rDNA Probes
  Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Ho Kim, Hyun Hee Kim
  Plant Breeding and Biotechnology.2019; 7(3): 237.     CrossRef
• Rapid and Efficient FISH using Pre-Labeled Oligomer Probes
  Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Nam-Soo Kim, Murukarthick Jayakodi, Jee Young Park, Tae-Jin Yang, Hyun Hee Kim
  Scientific Reports.2018;[Epub]     CrossRef
• Identification of ABSCISIC ACID (ABA) signaling related genes in Panax ginseng
  Jeongeui Hong, Hogyum Kim, Hojin Ryu
  Journal of Plant Biotechnology.2018; 45(4): 306.     CrossRef

Eclipta prostrata and E. alba are annual herbal medicinal plants and have been used as Chinese medicinal tonics. Both species are widely distributed in tropical and subtropical regions as well as in Korea. Both species have similar morphological features but E. alba has smoother leaf blade margins compared with E. prostrata. Although both species are utilized as oriental medicines, E. prostrata is more widely used than E. alba. Morphological semblances have confounded identification of either species. Here, we report the complete chloroplast genomes of both species to provide an authentication system between the two species and understand their diversity. Both chloroplast genomes were 151,733–151,757 bp long and composed of a large single copy (83,285–83,300 bp), a small single copy (18,283–18,346 bp), and a pair of inverted repeats (25,075–25,063 bp). Gene annotation revealed 80 protein coding genes, 30 tRNA genes and four rRNA genes. A phylogenetic analysis revealed that the genus Eclipta is grouped with Heliantheae tribe species in the Asteraceae family. A comparative analysis verified 29 InDels and 58 SNPs between chloroplast genomes of E. prostrata and E. alba. The low chloroplast genome sequence diversity indicates that both species are really close to each other and are not completely diverged yet. We developed six DNA markers that distinguish E. prostrata and E. alba based on the polymorphisms of chloroplast genomes between E. prostrata and E. alba. The chloroplast genome sequences and the molecular markers generated in this study will be useful for further research of Eclipta species and accurate classification of medicinal herbs.

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• A review on the phytochemicals of Eclipta prostrata and Eclipta alba: Antioxidants and antidiabetic activities
  Nur Nahar Sohe, John Sushma Nannepaga, Wan Amir Nizam Wan Ahmad, Norizah Mhd. Sarbon, Mannur Ismail Shaik
  Pharmacological Research - Natural Products.2026; 10: 100483.     CrossRef
• Construction of a Single File Reference Transcriptome Database for Deodeok (Codonopsis lanceolata) and Sseumbagwi (Ixeridium dentata)
  Tae-Ho Lee, Yun-Ho Oh, Ji-Nam Kang, Si-Myung Lee
  Korean Journal of Breeding Science.2023; 55(4): 321.     CrossRef
• Unraveling the secrets of Eclipta alba (L.) Hassk.: a comprehensive study of morpho-anatomy and DNA barcoding
  D. K. Wahyuni, B. F. Yoku, S. R. Mukarromah, P. R. Purnama, M. Ilham, G. A. Rakashiwi, D. T. Indriati, Junairiah, S. Wacharasindhu, S. Prasongsuk, S. Subramaniam, H. Purnobasuki
  Brazilian Journal of Biology.2023;[Epub]     CrossRef
• Inheritance of chloroplast and mitochondrial genomes in cucumber revealed by four reciprocal F1 hybrid combinations
  Hyun-Seung Park, Won Kyung Lee, Sang-Choon Lee, Hyun Oh Lee, Ho Jun Joh, Jee Young Park, Sunggil Kim, Kihwan Song, Tae-Jin Yang
  Scientific Reports.2021;[Epub]     CrossRef
• Comparative Chloroplast Genome Analyses of Species in Gentiana section Cruciata (Gentianaceae) and the Development of Authentication Markers
  Tao Zhou, Jian Wang, Yun Jia, Wenli Li, Fusheng Xu, Xumei Wang
  International Journal of Molecular Sciences.2018; 19(7): 1962.     CrossRef

Korean ginseng (Panax ginseng) is a well-known valuable medicinal plant with excellent therapeutic effects, however its complex genome structure has not been elucidated yet. To understand its genome structure, we obtained ten ginseng bacterial artificial chromosome (BAC) clone sequences by single-molecule real-time (SMRT) sequencing platform using a pooled DNA of the BAC clones. Out of the ten BAC clones, nine were completely assembled without any gap and one remained a single gap. The total length of BAC clone sequences was 1,163,364 bp. Sophisticated sequence analysis revealed that the 89.7% of the sequences are high copy repeat regions and the remaining 10.3% are non-repeat regions. Eleven protein-coding genes were identified in the non-repeat regions. Most of the repeat regions show more than 1,000 copies and complex structure of various repetitive elements. Ty3/Gypsy family long terminal repeat retrotransposons (LTR-RTs) are predominant repeats occupying 46.9% of the 1,163-kbp sequence. We identified six novel LTR-RTs and their insertion time. Fluorescence in situ hybridization (FISH) analysis demonstrated that PgDel2 and PgDel5 elements had a subgenome-biased distribution. Collectively, our analysis reveals that ginseng genome has very complex genome structure with abundant repetitive elements and rare gene frequency.

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• High-resolution genetic map and SNP chip for molecular breeding in Panax ginseng, a tetraploid medicinal plant
  Woohyeon Cho, Woojong Jang, Hyeonah Shim, Jiseok Kim, Youngju Oh, Jee Young Park, Young Chang Kim, Jung-Woo Lee, Ick-Hyun Jo, Misun Lee, Jinsu Gil, Martin Mascher, Murukarthick Jayakodi, Xuejiao Liao, Jiang Xu, Deqiang Dou, Yi Lee, Tae-Jin Yang
  Horticulture Research.2024;[Epub]     CrossRef
• Beyond genome: Advanced omics progress of Panax ginseng
  Wenjing Yu, Siyuan Cai, Jiali Zhao, Shuhan Hu, Chen Zang, Jiang Xu, Lianghai Hu
  Plant Science.2024; 341: 112022.     CrossRef
• Cytokinin signaling promotes root secondary growth and bud formation in Panax ginseng
  Kyoung Rok Geem, Yookyung Lim, Jeongeui Hong, Wonsil Bae, Jinsu Lee, Soeun Han, Jinsu Gil, Hyunwoo Cho, Hojin Ryu
  Journal of Ginseng Research.2024; 48(2): 220.     CrossRef
• Construction of a Single File Reference Transcriptome Database for Deodeok (Codonopsis lanceolata) and Sseumbagwi (Ixeridium dentata)
  Tae-Ho Lee, Yun-Ho Oh, Ji-Nam Kang, Si-Myung Lee
  Korean Journal of Breeding Science.2023; 55(4): 321.     CrossRef
• Salinity responses and tolerance mechanisms in underground vegetable crops: an integrative review
  Kumar Nishant Chourasia, Sanket Jijabrao More, Ashok Kumar, Dharmendra Kumar, Brajesh Singh, Vinay Bhardwaj, Awadhesh Kumar, Sourav Kumar Das, Rajesh Kumar Singh, Gaurav Zinta, Rahul Kumar Tiwari, Milan Kumar Lal
  Planta.2022;[Epub]     CrossRef
• Dynamic evolution of Panax species
  Hyeonah Shim, Nomar Espinosa Waminal, Hyun Hee Kim, Tae-Jin Yang
  Genes & Genomics.2021; 43(3): 209.     CrossRef
• Gibberellin Signaling Promotes the Secondary Growth of Storage Roots in Panax ginseng
  Chang Pyo Hong, Jinsoo Kim, Jinsu Lee, Seung-il Yoo, Wonsil Bae, Kyoung Rok Geem, Jin Yu, Inbae Jang, Ick Hyun Jo, Hyunwoo Cho, Donghwan Shim, Hojin Ryu
  International Journal of Molecular Sciences.2021; 22(16): 8694.     CrossRef
• Genetic diversity among cultivated and wild Panax ginseng populations revealed by high-resolution microsatellite markers
  Woojong Jang, Yeeun Jang, Nam-Hoon Kim, Nomar Espinosa Waminal, Young Chang Kim, Jung Woo Lee, Tae-Jin Yang
  Journal of Ginseng Research.2020; 44(4): 637.     CrossRef
• Till 2018: a survey of biomolecular sequences in genus Panax
  Vinothini Boopathi, Sathiyamoorthy Subramaniyam, Ramya Mathiyalagan, Deok-Chun Yang
  Journal of Ginseng Research.2020; 44(1): 33.     CrossRef
• Five-color fluorescence in situ hybridization system for karyotyping of Panax ginseng
  Nomar Espinosa Waminal, Tae-Jin Yang, Jun-Gyo In, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2020; 61(5): 869.     CrossRef
• Complete Mitochondrial Genome and a Set of 10 Novel Kompetitive Allele-Specific PCR Markers in Ginseng (Panax ginseng C. A. Mey.)
  Woojong Jang, Hyun Oh Lee, Jang-Uk Kim, Jung-Woo Lee, Chi-Eun Hong, Kyong-Hwan Bang, Jong-Wook Chung, Ick-Hyun Jo
  Agronomy.2020; 10(12): 1868.     CrossRef
• Molecular Genetic Diversity and Population Structure of Ginseng Germplasm in RDA-Genebank: Implications for Breeding and Conservation
  Kyung Jun Lee, Jung-Ro Lee, Raveendar Sebastin, Gyu-Taek Cho, Do Yoon Hyun
  Agronomy.2020; 10(1): 68.     CrossRef
• Genome and evolution of the shade‐requiring medicinal herb Panax ginseng
  Nam‐Hoon Kim, Murukarthick Jayakodi, Sang‐Choon Lee, Beom‐Soon Choi, Woojong Jang, Junki Lee, Hyun Hee Kim, Nomar E. Waminal, Meiyappan Lakshmanan, Binh van Nguyen, Yun Sun Lee, Hyun‐Seung Park, Hyun Jo Koo, Jee Young Park, Sampath Perumal, Ho Jun Joh, Ha
  Plant Biotechnology Journal.2018; 16(11): 1904.     CrossRef
• Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome
  Ick-Hyun Jo, Jinsu Lee, Chi Hong, Dong Lee, Wonsil Bae, Sin-Gi Park, Yong Ahn, Young Kim, Jang Kim, Jung Lee, Dong Hyun, Sung-Keun Rhee, Chang Hong, Kyong Bang, Hojin Ryu
  Genes.2017; 8(9): 228.     CrossRef

Miniature transposable elements (mTEs) such as miniature inverted-repeat transposable element (MITE), terminal repeat retrotransposon in miniature, and short interspersed element are exquisite sources for marker development. mTEs are short, non-autonomous and stably inherited. The high-copy members are widely distributed into the gene rich euchromatic regions. Here, we conducted a modified transposon display (TD) for a high-copy MITE family, BraSto-2 (Bs2). The Bs2-specific primers derived from conserved sequences of Bs2 members as well as MseI adapter primers were used for polymerase chain reaction (PCR) in two Brassica rapa accessions, ‘Chiifu’ and ‘Kenshin’. The pooled PCR products were sequenced by Illumina sequencing platform instead of high-resolution gel electrophoresis. Subsequent in silico-based insertion polymorphism (IP) analysis (next-generation sequencing [NGS]-based Bs2 transposon display) was conducted, which generated more than 99 putative polymorphic insertion sites between ‘Chiifu’ and ‘Kenshin’. Among 90 successful PCR amplification, 34 showed Bs2 IP (IP-Bs2) between ‘Chiifu’ and ‘Kenshin’ accessions, 27 and seven ‘Chiifu’- and ‘Kenshin’-unique insertions, respectively. When the 90 IP-Bs2 primer sets were applied to 10 Brassica accessions, including four additional B. rapa and B. oleracea accessions, 69 (76%) showed insertion olymorphism among accessions. The IP-Bs2 were evenly distributed through all the chromosomes and provide rich polymorphism among various B. rapa and B. oleracea accessions demonstrating the usefulness of these markers for various genetic diversity and molecular breeding studies in Brassica. In addition, NGS-based TD will be applicable to various high copy transposable elements family for high throughput and rapid polymorphic marker development which will be helpful for efficient plant genomics and breeding purposes.

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• Nuclear and chloroplast genome diversity revealed by low-coverage whole-genome shotgun sequence in 44 Brassica oleracea breeding lines
  Sampath Perumal, Nomar Espinosa Waminal, Jonghoon Lee, Hyun-Jin Koo, Boem-soon Choi, Jee Young Park, Kyounggu Ahn, Tae-Jin Yang
  Horticultural Plant Journal.2021; 7(6): 539.     CrossRef
• Miniature inverted-repeat transposable elements (MITEs), derived insertional polymorphism as a tool of marker systems for molecular plant breeding
  Venkatesh, B. Nandini
  Molecular Biology Reports.2020; 47(4): 3155.     CrossRef

The genus Brassica is an important resource for major agricultural products such as oils, vegetable and fodder. The Brassiceae tribe-specific whole-genome triplication that occurred ~15.9 million years ago influenced the speciation and morphological diversification that has been exploited in agriculture, making Brassica an excellent model system for studying polyploidization-mediated evolution. Genome sequencing and comparative genome analysis have revealed conserved structures and uncovered the genome evolution of Brassica species. While chromosome shuffling and asymmetric subgenome gene retention are widely reported in Brassica species, limited information is available about the dynamics of repetitive elements (REs), which are central to epigenetic mechanisms and thus play a pivotal role in plant genome adaptation and evolution. The assembled reference genome sequences of B. rapa (AA) and B. oleracea (CC), and their derived allotetraploid, B. napus (AACC), cover 58%, 86%, and 75% of their respective estimated genome sizes. The remaining non-assembled genome portions vary between these three genome sequences, and the major components remain hidden in each genome. Here, we review the dynamics of the major Brassica repeats that have played roles in speciation of the AA, CC, and AACC genomes. We show that 10 major Brassica repeats appear to occupy more than 50% of each respective unassembled genome sequence, yet represent less than 1% of assembled reference genome sequences. We have estimated their genome proportions using whole-genome Illumina reads and cytogenetic analyses in an attempt to understand the role of these repeats in genome evolution.

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  Mingliang Jiang, Zongxiang Zhan, Xiaonan Li, Zhongyun Piao
  Frontiers in Plant Science.2025;[Epub]     CrossRef
• Fluorescence in situ Hybridization Analysis of Oligonucleotide 5S Ribosomal DNA, 45S Ribosomal DNA, and (TTTAGGG)3 Locations in Gloriosa superba L.
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• Exploring the mechanism of blindness physiopathy in Brassica oleracea var italica L. by comprehensive transcriptomics and metabolomics analysis
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• Chromosome-scale reference genome of broccoli (Brassica oleracea var. italica Plenck) provides insights into glucosinolate biosynthesis
  Qiuyun Wu, Shuxiang Mao, Huiping Huang, Juan Liu, Xuan Chen, Linghui Hou, Yuxiao Tian, Jiahui Zhang, Junwei Wang, Yunsheng Wang, Ke Huang
  Horticulture Research.2024;[Epub]     CrossRef
• Physical mapping of ribosomal DNA sites and genome size in polyploid series of Urochloa humidicola (Rendle) Morrone & Zuloaga (Poaceae)
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• Evolutionary expansion and expression dynamics of cytokinin-catabolizing CKX gene family in the modern amphidiploid mustard (Brassica sp.)
  Aniruddhabhai Khuman, Vijay Kumar, Bhupendra Chaudhary
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• Evolutionary divergence in embryo and seed coat development of U’s Triangle Brassica species illustrated by a spatiotemporal transcriptome atlas
  Peng Gao, Teagen D. Quilichini, Hui Yang, Qiang Li, Kirby T. Nilsen, Li Qin, Vivijan Babic, Li Liu, Dustin Cram, Asher Pasha, Eddi Esteban, Janet Condie, Christine Sidebottom, Yan Zhang, Yi Huang, Wentao Zhang, Pankaj Bhowmik, Leon V. Kochian, David Konki
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• Comparative triple-color FISH mapping in eleven Senna species using rDNA and telomeric repeat probes
  Thi Hong Nguyen, Nomar Espinosa Waminal, Do Sin Lee, Remnyl Joyce Pellerin, Thanh Dat Ta, Nicole Bon Campomayor, Byung Yong Kang, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2021; 62(6): 927.     CrossRef
• Chromosomal Mapping of Tandem Repeats Revealed Massive Chromosomal Rearrangements and Insights Into Senna tora Dysploidy
  Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Sang-Ho Kang, Hyun Hee Kim
  Frontiers in Plant Science.2021;[Epub]     CrossRef
• Nuclear and chloroplast genome diversity revealed by low-coverage whole-genome shotgun sequence in 44 Brassica oleracea breeding lines
  Sampath Perumal, Nomar Espinosa Waminal, Jonghoon Lee, Hyun-Jin Koo, Boem-soon Choi, Jee Young Park, Kyounggu Ahn, Tae-Jin Yang
  Horticultural Plant Journal.2021; 7(6): 539.     CrossRef
• Comparative Molecular Cytogenetic Analysis of Ribosomal DNAs Distribution inBrassicaSpecies
  Franklin H. Mancia, Jung Sun Kim, Yoon-Jung Hwang
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• Omics: The way forward to enhance abiotic stress tolerance inBrassica napusL
  Ali Raza, Ali Razzaq, Sundas Saher Mehmood, Muhammad Azhar Hussain, Su Wei, Huang He, Qamar U Zaman, Zhang Xuekun, Cheng Yong, Mirza Hasanuzzaman
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• Subgenome Discrimination in Brassica and Raphanus Allopolyploids Using Microsatellites
  Nicole Bon Campomayor, Nomar Espinosa Waminal, Byung Yong Kang, Thi Hong Nguyen, Soo-Seong Lee, Jin Hoe Huh, Hyun Hee Kim
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  Shayani Das Laha, Smritikana Dutta, Anton R. Schäffner, Malay Das
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• BrmiR828 Targets BrPAP1, BrMYB82, and BrTAS4 Involved in the Light Induced Anthocyanin Biosynthetic Pathway in Brassica rapa
  Bo Zhou, Jingtong Leng, Yanyun Ma, Pengzhen Fan, Yuhua Li, Haifang Yan, Qijiang Xu
  International Journal of Molecular Sciences.2020; 21(12): 4326.     CrossRef
• Comparative Cyto-molecular Analysis of Repetitive DNA Provides Insights into the Differential Genome Structure and Evolution of Five Cucumis Species
  Shuqiong Yang, Chunyan Cheng, Xiaodong Qin, Xiaqing Yu, Qunfeng Lou, Ji Li, Chuntao Qian, Jinfeng Chen
  Horticultural Plant Journal.2019; 5(5): 192.     CrossRef
• FISH mapping of rDNA and telomeric repeats in 10 Senna species
  Remnyl Joyce Pellerin, Nomar Espinosa Waminal, Hyun Hee Kim
  Horticulture, Environment, and Biotechnology.2019; 60(2): 253.     CrossRef
• Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa
  Mingliang Jiang, Xiangshu Dong, Hong Lang, Wenxing Pang, Zongxiang Zhan, Xiaonan Li, Zhongyun Piao
  International Journal of Molecular Sciences.2018; 19(7): 2064.     CrossRef
• Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax
  Junki Lee, Nomar Espinosa Waminal, Hong-Il Choi, Sampath Perumal, Sang-Choon Lee, Van Binh Nguyen, Woojong Jang, Nam-Hoon Kim, Li-zhi Gao, Tae-Jin Yang
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• Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution
  Sampath Perumal, Nomar Espinosa Waminal, Jonghoon Lee, Junki Lee, Beom-Soon Choi, Hyun Hee Kim, Marie-Angèle Grandbastien, Tae-Jin Yang
  Scientific Reports.2017;[Epub]     CrossRef