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"CS"

Research Articles

Effects of Citrus (Citrus spp.) Genotype and Carbohydrate Source Composition on Callus Growth and Somatic Embryogenesis and Recovery of the Plant Regeneration Ability
Seong Beom Jin, Dong Hoon Lee, Suk Man Park, Young Eel Moon, Jee-Soo Park
Plant Breed. Biotech. 2026;14:1-18.
Published online February 5, 2026
DOI: https://doi.org/10.9787/PBB.2026.14.1

Carbohydrates and genetic factors influence cell division in citrus fruits from ovule cultures. Here, we investigated the effects of various carbohydrate sources (sorbitol, maltose, galactose, and lactose) on cell proliferation, somatic embryogenesis, and plant regeneration in three Citrus unshiu cultivars (‘Miyagawa wase’ [MW], ‘Haryejosaeng’ [HW], and ‘Nankan 20 gou’ [NW]), and one C. reticulata cultivar (‘Ootaponkan’ [PM]). In PM, carbohydrate sources did not affect proliferation; MW showed a significant but marginal increase in media containing 300 mM mannitol. It also proliferated well in media supplemented with 300 mM sorbitol and a mixture of galactose and lactose. NW achieved the best rate with 100 mM mannitol and 146 mM lactose, whereas HW proliferated well with 100 mM mannitol alone. Phylogenetic analysis using 18 citrus varieties showed distinct genetic differences among the cultivars, suggesting that the differences in regeneration capacities in different carbohydrate sources could be attributed to their genetic differences. This study provides valuable insights for optimizing tissue culture protocols for mandarin varieties and may enhance the efficiency of citrus breeding and tissue culture applications.

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Agronomic Traits of a New Soybean Germplasm with Higher Ratio of Four-seeded Pods
Hyun Jo, Ammala Namsavanh, Changwan Woo, Hwayeop Kim, Syada Nizer Sultana, Jong Tae Song, Jeong-Dong Lee
Plant Breed. Biotech. 2022;10(3):197-202.   Published online August 31, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.3.197

The number of four-seeded pods is a plant trait that is of great interest in terms of increasing soybean production. The
objective
of this study was to understand the agronomic characteristics of four-seeded pods of FS1159, which contain a significantly higher ratio of four-seeded pods than do other genotypes. FS1159 showed a significantly lower ratio of one- and two-seeded pods and a significantly higher ratio of three- (39.6%) and four- (11.3%) seeded pods than did the four check soybeans. The average values of the traits of FS1159 in this study were: plant height, 58.1 cm; the number of nodes, 15.7; the number of branches, 6.5; and 100-seed weight, 20.3 g. These results indicate that FS1159 can be used as a new genetic resource to explore the traits of four-seeded-pod and improve the soybean yield.

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Development of Molecular Markers for Specific Detection of Xanthomonas campestris pv. incanae
Mehede Hassan Rubel, Denison Michael Immanuel Jesse, Ujjal Kumar Nath, Jung-Hee Jeong, Hoy-Taek Kim, Jong-In Park, Ill-Sup Nou
Plant Breed. Biotech. 2021;9(4):287-297.   Published online December 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.4.287

Xanthomonas campestris pv. incanae (Xci) is the causal agent of bacterial blight disease in ornamental crucifers. We compared the whole genomes of closely related Xanthomonas campestris pv. campestris, incanae, raphani and four other species of Xanthomonas following comparative genomics approach. We found 82 singletons out of 4024 Xci genes upon comparison. Out of 82 singletons, top 10 were selected for designing Xci specific marker. Five primers; XCI_1F/R, XCI_2F/R, XCI_3F/R, XCI_5F/R and XCI_6F/R produced amplicons of 495 bp, 503 bp, 612 bp, 665 bp and 468 bp, respectively expected to detect Xanthomonas campestris pv. incanae (Xci). In conclusion, five effective markers were developed for the detection of Xci pathogen by whole genome alignment, which could be served as effective tools in seed quarantine.

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  • An update to the molecular identification of Xanthomonas campestris disease causing pathogens in crucifers – A mini review
    Nihar Sahu, Masao Watanabe, Jong-In Park
    Physiological and Molecular Plant Pathology.2026; 142: 103102.     CrossRef
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Morphological Variation of Accessions of Perilla Crop (Perilla frutescens L.) and Related Weedy Types Collected from South Korea
Ye Ju Ha, Kyu Jin Sa, Ju Kyong Lee
Plant Breed. Biotech. 2021;9(1):77-87.   Published online March 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.1.77

In this study, in order to understand the differentiation process of Perilla crop and related weedy types collected from South Korea, morphological variation between accessions of cultivated var. frutescens and related weedy types of var. frutescens and var. crispa was investigated by principal component analysis (PCA) using morphological characteristics, especially including seed traits such as seed size, seed hardness, seed color and seed germination rate. The first and second principal components accounted for 54.1% and 17.9% of the total variance, respectively. In the PCA analysis, most of the qualitative and quantitative traits contributed significantly to the positive or negative direction on the first axis. Thus, the first axis could be used mainly to distinguish between accessions of cultivated var. frutescens and weedy var. frutescens, and also between accessions of cultivated and weedy types of var. frutescens and weedy var. crispa. However, for several accessions it was not possible to discriminate clearly between accessions of cultivated and weedy types of var. frutescens and also between accessions of the two weedy types of var. frutescens and var. crispa. The results of the PCA analysis are thought to provide useful information for understanding the cultivation process of Perilla crop and the differentiation process of Perilla crop and related weedy types. Also, this study demonstrates the efficacy and utility of PCA analysis using morphological traits, including seed traits such as seed size, seed hardness, seed color and seed germination rate, in the study of morphological variation of Perilla crop and related weedy types.

Citations

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  • Determination of Production Year Using Multivariate Statistical Analysis from FTIR Spectrum Data of Perilla Leaves
    Hye-Young Seo, Eun Ji Suh, Eun Bin Choi, Mi Ja Lee, Han Gyeol Lee, Woo Duck Seo, Jung In Kim, Seung-Yeob Song
    Korean Journal of Breeding Science.2024; 56(1): 11.     CrossRef
  • Morphological Variation in Normal Maize Landrace Accessions Collected from South Sudan
    Emmanuel Andrea Mathiang, Kyu Jin Sa, Hyeon Park, So Jung Jang, Ju Kyong Lee
    Plant Breeding and Biotechnology.2023; 11(1): 15.     CrossRef
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Review Article

Visiting Bitter Gourd (Momordica charantia) from a Breeding Perspective: A Review
Hari Kesh, Prashant Kaushik
Plant Breed. Biotech. 2020;8(3):211-225.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.211

Bitter gourd is an important vegetable of the family Cucurbitaceae, cultivated mainly in humid and subtropical Asia. Bitter gourd is a vegetable with immense health benefits due to the presence of medicinal compounds such as charantin, vicine, and polypeptide-p, which play essential roles in lessening blood glucose levels. Moreover, bitter gourd fruits are particularly rich in vitamin C, minerals, and carotenes. Here, an effort has been made to critically evaluate the extent of achievements during the enhancement and enactment of bitter gourd breeding programs with the use of latest technologies. Broadening the genetic base of cultivated bitter gourd varieties as a result of enrichment of existing resources by using wild species in breeding programs. Practical seed production technological know-how along with the use of the MS system (male sterility)/chemical-induced sterility procedure is nonetheless vital to cope with market demands. Superior yielding bitter gourd hybrids combining early maturity and resistance to biotic and abiotic stresses are regularly needed to cope with the challenge of bitter gourd production.

Citations

Citations to this article as recorded by  
  • Utilization of crop wild relatives in genetic improvement of bitter gourd, Momordica charantia L.
    S. Devi, R. Neelavathi, C. Indu Rani, R. Kalaiyarasi, K. Gurusamy
    Genetic Resources and Crop Evolution.2026;[Epub]     CrossRef
  • Status of soluble sugars and the related enzymes of Momordica charantia L. seedlings in response to low temperature stress
    V. Devi, M. Kaur Sangha, M. Pathak, P. Kumar, M. Pal
    European Journal of Horticultural Science.2023; 88(6): 1.     CrossRef
  • Advances in melon (Cucumis melo L.) breeding: An update
    Hari Kesh, Prashant Kaushik
    Scientia Horticulturae.2021; 282: 110045.     CrossRef
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Research Articles

Growth Characteristics and Biological Responses of Korean Elite Soybean (Glycine max L. Merr.) Cultivars Exposed to Gamma-Rays
Juhyun Im, Jaihyunk Ryu, Woon Ji Kim, Sang Hun Kim, Si-Yong Kang, Bo-Keun Ha
Plant Breed. Biotech. 2018;6(2):109-118.   Published online June 1, 2018
DOI: https://doi.org/10.9787/PBB.2018.6.2.109

The present study was conducted to evaluate the biological responses of soybean irradiated by gamma-rays. Four elite Korean soybean cultivars, Kwangankong, Shinpaldal-2, Shinhwakong, and Ilmikong, were irradiated with 100–400 Gy of gamma-rays. All cultivars showed significant reductions in morphological parameters. Seedling emergence rates of Kwangankong, Shinpaldal-2, Shinhwakong, and Ilmikong decreased by 46%, 31%, 44%, and 43% at 400 Gy, respectively. Plant height and fresh weight decreased with increasing dose. The median reduction dose (RD50) for plant height ranged from 184 to 278 Gy with an average of 212 Gy. The optimal dose of gamma irradiation for inducing mutation in the four elite soybean cultivars was in the range 200–300 Gy. Contents of malonaldehyde (MDA) in the gamma-ray irradiated plants were higher than those in the controls. With the exception of Kwangankong, activities of ascorbate peroxidase (APX) in other cultivars decreased at 100 Gy and started to increase significantly at 200 Gy and Shinhwakong cultivar had highest APX value observed at 300 Gy. No significant changes in peroxidase (POD) activity were observed in the Kwangankong, Shinpaldal-2, and Shinhwakong, while, POD activity increased with increasing dose in Ilmikong. In addition, gamma-ray treatments elicited a marked reduction in chlorophyll a contents compared to chlorophyll b contents in Kwangankong, Shinpaldal-2, and Ilmikong. Growth characteristics (plant height and fresh weight) were highly negatively (P < 0.01) correlated with the dose of gamma-rays, while the MDA content and APX activities were positively (P < 0.05) correlated with dose.

Citations

Citations to this article as recorded by  
  • Growth and biological responses of soybean cultivars to gamma-ray and electron beam irradiation
    Jeong Woo Lee, Jung Min Kim, Dae June Kim, Jin-Mun Yun, Jin-Baek Kim, Min Jeong Hong, Chan Seop Ko, Joon-Woo Ahn, Bo-Keun Ha, Soon-Jae Kwon
    International Journal of Radiation Biology.2026; 102(5): 520.     CrossRef
  • Mutation induction in soybean (Glycine max L.) M.1.1.3 line through gamma irradiation in the M1 generation
    Nilahayati, D Saputra, Neni, Yuliasti
    IOP Conference Series: Earth and Environmental Science.2025; 1490(1): 012040.     CrossRef
  • Stimulating growth parameters by magnetic field in irradiated with gamma radiation soybean varieties
    Name Özdinç, Fehime Sevil Yalçın
    Radiation Effects and Defects in Solids.2025; : 1.     CrossRef
  • Effect of Gamma Irradiation on Survival, Fruit Characteristic, and Thorn Length in Different Varieties of Citrus
    Cheol-Woo Choi, Min-Ju Kim, Seong-beom Jin, Suk-Man Park, Su-Hyun Yun
    Korean Journal of Breeding Science.2023; 55(4): 296.     CrossRef
  • Radio-sensitivity of diverse tomato genotypes with respect to optimization of gamma irradiation dose
    Soham Hazra, Shouvik Gorai, Sudip Bhattacharya, Suvojit Bose, Pranab Hazra, Arup Chattopadhyay, Anirban Maji
    Brazilian Journal of Botany.2022; 45(3): 917.     CrossRef
  • Gamma-ray Irradiation on Radio Sensitivity in Cnidium officinale Makino
    Jin Tae Jeong, Bo Keun Ha, Jong Won Han, Jeong Hoon Lee, Sang Hoon Lee, Myeong Won Oh, Chun Geon Park, Kyung Ho Ma, Jae Ki Chang, Sang Hoon Kim, Jin Baek Kim, Si Yong Kang, Jai Hyunk Ryu
    Korean Journal of Medicinal Crop Science.2020; 28(5): 339.     CrossRef
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Characterization of Chromosome-Specific Microsatellite Repeats and Telomere Repeats Based on Low Coverage Whole Genome Sequence Reads in Panax ginseng
Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Woojong Jang, Hyun Hee Kim, Tae-Jin Yang
Plant Breed. Biotech. 2018;6(1):74-81.   Published online March 1, 2018
DOI: https://doi.org/10.9787/PBB.2018.6.1.74

Repetitive DNA elements are ubiquitous in plant genomes. Although repeats provide relevant information for cytogenetic, evolutionary, and genomic studies, identifying and characterizing their sequence and chromosomal distribution are not always easily achieved through conventional methods. However, a high-throughput identification of genomic repeats can be obtained with short reads from next-generation sequencing data. Here, we identified the telomeric and two chromosome-specific repeats in Panax ginseng using low-coverage whole genome sequence data. The telomeric repeat sequence is same with the canonical angiosperm sequence, (TTTAGGG)n, and localized mostly in every chromosome termini, except for an additional interstitial location in chromosome 10. A dinucleotide (GA) microsatellite, PgGA15, with total genome representation (GR) of more than 33 kb localized in the long arm of chromosome 20. An 11-bp minisatellite, Pgms1, with more than 58 kb of GR localized in the long arm of chromosome 1. This study provides chromosome-specific markers for cytogenetic studies in P. ginseng.

Citations

Citations to this article as recorded by  
  • Beyond genome: Advanced omics progress of Panax ginseng
    Wenjing Yu, Siyuan Cai, Jiali Zhao, Shuhan Hu, Chen Zang, Jiang Xu, Lianghai Hu
    Plant Science.2024; 341: 112022.     CrossRef
  • Identification and functional analysis of COLD-signaling-related genes in Panax ginseng
    Jeongeui Hong, Hojin Ryu
    Journal of Plant Biotechnology.2023;[Epub]     CrossRef
  • Cell cycle synchronization in Panax ginseng roots for cytogenomics research
    Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Jin Yang, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2022; 63(1): 137.     CrossRef
  • Gibberellin Signaling Promotes the Secondary Growth of Storage Roots in Panax ginseng
    Chang Pyo Hong, Jinsoo Kim, Jinsu Lee, Seung-il Yoo, Wonsil Bae, Kyoung Rok Geem, Jin Yu, Inbae Jang, Ick Hyun Jo, Hyunwoo Cho, Donghwan Shim, Hojin Ryu
    International Journal of Molecular Sciences.2021; 22(16): 8694.     CrossRef
  • Functional characterization of gibberellin signaling-related genes in Panax ginseng
    Jinsoo Kim, Woo-Ri Shin, Yang-Hoon Kim, Donghwan Shim, Hojin Ryu
    Journal of Plant Biotechnology.2021; 48(3): 148.     CrossRef
  • Interstitial Telomeric-like Repeats (ITR) in Seed Plants as Assessed by Molecular Cytogenetic Techniques: A Review
    Alexis J. Maravilla, Marcela Rosato, Josep A. Rosselló
    Plants.2021; 10(11): 2541.     CrossRef
  • FISH Karyotype Comparison ofPlatycodon grandiflorus(Jacq.) A. DC. ‘Jangbaek’ and Its Colchicine-Induced Tetraploid ‘Etteumbaek
    Eliazar Alumbro Peniton Jr., Yurry Um, Hyun Hee Kim
    Plant Breeding and Biotechnology.2020; 8(4): 389.     CrossRef
  • Five-color fluorescence in situ hybridization system for karyotyping of Panax ginseng
    Nomar Espinosa Waminal, Tae-Jin Yang, Jun-Gyo In, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2020; 61(5): 869.     CrossRef
  • FISH Karyotype Comparison between Wild and CultivatedPerillaSpecies Using 5S and 45S rDNA Probes
    Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Ho Kim, Hyun Hee Kim
    Plant Breeding and Biotechnology.2019; 7(3): 237.     CrossRef
  • Rapid and Efficient FISH using Pre-Labeled Oligomer Probes
    Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Nam-Soo Kim, Murukarthick Jayakodi, Jee Young Park, Tae-Jin Yang, Hyun Hee Kim
    Scientific Reports.2018;[Epub]     CrossRef
  • Identification of ABSCISIC ACID (ABA) signaling related genes in Panax ginseng
    Jeongeui Hong, Hogyum Kim, Hojin Ryu
    Journal of Plant Biotechnology.2018; 45(4): 306.     CrossRef
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Review Articles

Repeat Evolution in Brassica rapa (AA), B. oleracea (CC), and B. napus (AACC) Genomes
Nomar Espinosa Waminal, Sampath Perumal, Jonghoon Lee, Hyun Hee Kim, Tae-Jin Yang
Plant Breed. Biotech. 2016;4(2):107-122.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.107

The genus Brassica is an important resource for major agricultural products such as oils, vegetable and fodder. The Brassiceae tribe-specific whole-genome triplication that occurred ~15.9 million years ago influenced the speciation and morphological diversification that has been exploited in agriculture, making Brassica an excellent model system for studying polyploidization-mediated evolution. Genome sequencing and comparative genome analysis have revealed conserved structures and uncovered the genome evolution of Brassica species. While chromosome shuffling and asymmetric subgenome gene retention are widely reported in Brassica species, limited information is available about the dynamics of repetitive elements (REs), which are central to epigenetic mechanisms and thus play a pivotal role in plant genome adaptation and evolution. The assembled reference genome sequences of B. rapa (AA) and B. oleracea (CC), and their derived allotetraploid, B. napus (AACC), cover 58%, 86%, and 75% of their respective estimated genome sizes. The remaining non-assembled genome portions vary between these three genome sequences, and the major components remain hidden in each genome. Here, we review the dynamics of the major Brassica repeats that have played roles in speciation of the AA, CC, and AACC genomes. We show that 10 major Brassica repeats appear to occupy more than 50% of each respective unassembled genome sequence, yet represent less than 1% of assembled reference genome sequences. We have estimated their genome proportions using whole-genome Illumina reads and cytogenetic analyses in an attempt to understand the role of these repeats in genome evolution.

Citations

Citations to this article as recorded by  
  • Construction and evaluation of Brassica rapa orphan genes overexpression library
    Mingliang Jiang, Zongxiang Zhan, Xiaonan Li, Zhongyun Piao
    Frontiers in Plant Science.2025;[Epub]     CrossRef
  • Fluorescence in situ Hybridization Analysis of Oligonucleotide 5S Ribosomal DNA, 45S Ribosomal DNA, and (TTTAGGG)3 Locations in Gloriosa superba L.
    Hongyou Zhao, Duo Wang, Haitao Li, Shuang Li, Yanfang Wang, Anshun Xu, Chunyong Yang, Ge Li, Yanqian Wang, Lixia Zhang
    Cytogenetic and Genome Research.2024; : 1.     CrossRef
  • Exploring the mechanism of blindness physiopathy in Brassica oleracea var italica L. by comprehensive transcriptomics and metabolomics analysis
    Alvaro Lopez-Zaplana, Juan Nicolas-Espinosa, Lorena Albaladejo-Marico, Micaela Carvajal
    Plant Physiology and Biochemistry.2024; 206: 108304.     CrossRef
  • Chromosome-scale reference genome of broccoli (Brassica oleracea var. italica Plenck) provides insights into glucosinolate biosynthesis
    Qiuyun Wu, Shuxiang Mao, Huiping Huang, Juan Liu, Xuan Chen, Linghui Hou, Yuxiao Tian, Jiahui Zhang, Junwei Wang, Yunsheng Wang, Ke Huang
    Horticulture Research.2024;[Epub]     CrossRef
  • Physical mapping of ribosomal DNA sites and genome size in polyploid series of Urochloa humidicola (Rendle) Morrone & Zuloaga (Poaceae)
    Ana Gabriela Damasceno, Marco Túlio Mendes Ferreira, Isadora Cardoso Soares, Sanzio Carvalho Lima Barrios, Cacilda Borges Do Valle, Vânia Helena Techio
    Botany Letters.2023; 170(4): 634.     CrossRef
  • Evolutionary expansion and expression dynamics of cytokinin-catabolizing CKX gene family in the modern amphidiploid mustard (Brassica sp.)
    Aniruddhabhai Khuman, Vijay Kumar, Bhupendra Chaudhary
    3 Biotech.2022;[Epub]     CrossRef
  • Evolutionary divergence in embryo and seed coat development of U’s Triangle Brassica species illustrated by a spatiotemporal transcriptome atlas
    Peng Gao, Teagen D. Quilichini, Hui Yang, Qiang Li, Kirby T. Nilsen, Li Qin, Vivijan Babic, Li Liu, Dustin Cram, Asher Pasha, Eddi Esteban, Janet Condie, Christine Sidebottom, Yan Zhang, Yi Huang, Wentao Zhang, Pankaj Bhowmik, Leon V. Kochian, David Konki
    New Phytologist.2022; 233(1): 30.     CrossRef
  • Comparative triple-color FISH mapping in eleven Senna species using rDNA and telomeric repeat probes
    Thi Hong Nguyen, Nomar Espinosa Waminal, Do Sin Lee, Remnyl Joyce Pellerin, Thanh Dat Ta, Nicole Bon Campomayor, Byung Yong Kang, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2021; 62(6): 927.     CrossRef
  • Chromosomal Mapping of Tandem Repeats Revealed Massive Chromosomal Rearrangements and Insights Into Senna tora Dysploidy
    Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Sang-Ho Kang, Hyun Hee Kim
    Frontiers in Plant Science.2021;[Epub]     CrossRef
  • Nuclear and chloroplast genome diversity revealed by low-coverage whole-genome shotgun sequence in 44 Brassica oleracea breeding lines
    Sampath Perumal, Nomar Espinosa Waminal, Jonghoon Lee, Hyun-Jin Koo, Boem-soon Choi, Jee Young Park, Kyounggu Ahn, Tae-Jin Yang
    Horticultural Plant Journal.2021; 7(6): 539.     CrossRef
  • Comparative Molecular Cytogenetic Analysis of Ribosomal DNAs Distribution inBrassicaSpecies
    Franklin H. Mancia, Jung Sun Kim, Yoon-Jung Hwang
    Korean Journal of Breeding Science.2021; 53(3): 206.     CrossRef
  • Omics: The way forward to enhance abiotic stress tolerance inBrassica napusL
    Ali Raza, Ali Razzaq, Sundas Saher Mehmood, Muhammad Azhar Hussain, Su Wei, Huang He, Qamar U Zaman, Zhang Xuekun, Cheng Yong, Mirza Hasanuzzaman
    GM Crops & Food.2021; 12(1): 251.     CrossRef
  • Subgenome Discrimination in Brassica and Raphanus Allopolyploids Using Microsatellites
    Nicole Bon Campomayor, Nomar Espinosa Waminal, Byung Yong Kang, Thi Hong Nguyen, Soo-Seong Lee, Jin Hoe Huh, Hyun Hee Kim
    Cells.2021; 10(9): 2358.     CrossRef
  • Gene duplication and stress genomics in Brassicas: Current understanding and future prospects
    Shayani Das Laha, Smritikana Dutta, Anton R. Schäffner, Malay Das
    Journal of Plant Physiology.2020; 255: 153293.     CrossRef
  • BrmiR828 Targets BrPAP1, BrMYB82, and BrTAS4 Involved in the Light Induced Anthocyanin Biosynthetic Pathway in Brassica rapa
    Bo Zhou, Jingtong Leng, Yanyun Ma, Pengzhen Fan, Yuhua Li, Haifang Yan, Qijiang Xu
    International Journal of Molecular Sciences.2020; 21(12): 4326.     CrossRef
  • Comparative Cyto-molecular Analysis of Repetitive DNA Provides Insights into the Differential Genome Structure and Evolution of Five Cucumis Species
    Shuqiong Yang, Chunyan Cheng, Xiaodong Qin, Xiaqing Yu, Qunfeng Lou, Ji Li, Chuntao Qian, Jinfeng Chen
    Horticultural Plant Journal.2019; 5(5): 192.     CrossRef
  • FISH mapping of rDNA and telomeric repeats in 10 Senna species
    Remnyl Joyce Pellerin, Nomar Espinosa Waminal, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2019; 60(2): 253.     CrossRef
  • Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa
    Mingliang Jiang, Xiangshu Dong, Hong Lang, Wenxing Pang, Zongxiang Zhan, Xiaonan Li, Zhongyun Piao
    International Journal of Molecular Sciences.2018; 19(7): 2064.     CrossRef
  • Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax
    Junki Lee, Nomar Espinosa Waminal, Hong-Il Choi, Sampath Perumal, Sang-Choon Lee, Van Binh Nguyen, Woojong Jang, Nam-Hoon Kim, Li-zhi Gao, Tae-Jin Yang
    Scientific Reports.2017;[Epub]     CrossRef
  • Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution
    Sampath Perumal, Nomar Espinosa Waminal, Jonghoon Lee, Junki Lee, Beom-Soon Choi, Hyun Hee Kim, Marie-Angèle Grandbastien, Tae-Jin Yang
    Scientific Reports.2017;[Epub]     CrossRef
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Global Trends in Plant Genomics Research to Improve Crop Productivity at PAG XXIV Conference
Shadi Rahimi, Kwon-Kyoo Kang, Yong-Gu Cho
Plant Breed. Biotech. 2016;4(1):1-15.   Published online February 28, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.1.1

Increasing demand for food commodities and energy supply highlight the necessity to further improve crop productivity. At the Plant and Animal Genome Conference (PAG XXIV), recent developments and future plans for genomics research of plants and animals were presented. PAG XXIV provided a forum to explore crop genomes with the aim of providing new opportunities for crop breeding and the foundation for functional genomic studies to improve agriculture production and help feed the growing population. Genetic diversity and population structure studies of crops have allowed us to explore alleles related to different characteristics important for plant breeding. Several useful databases were introduced in PAG XXIV. They were developed to integrate a growing set of commonly used data types and analysis tools with new capabilities for visualization, exploration, and predictive analysis. This review highlights the global trends in plant genomics presented at PAG XXIV by focusing on crop productivity.

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  • Drought-Tolerant Biotech Soybean Breeding in South America: Current Status, Commercialization, and Implications for Korea’s Technology Export Strategy
    Seung Young Choi, Yong Hun Song, Seung Muk Won, Kyeong Hee Lee, Ga Ram Kim, Taeyoung Um
    Korean Journal of Breeding Science.2026; 58(1): 13.     CrossRef
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Research Article

Leaf Proteome Analysis in Brassica rapa L. (Inbred line ‘Chiifu’) using Shotgun Proteome Approach
Joohyun Lee
Plant Breed. Biotech. 2015;3(4):389-395.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.389

Through high throughput shotgun proteomics approach, the proteome of seedling leaf of Brassica rapa L. was identified. From three biological replications, a total of 2,122 non-redundant proteins of Brassica rapa L seedling leaf were identified, with a wide range and unbiased physiochemical properties. Their pI values ranged from pH 4.27 (Bra004590) to pH 11.81 (Bra013905). Their molecular weight (MW) ranged from 5.6 kDa (Bra006908) to 534.5 kDa (Bra028068). Gene ontology enrichment analysis revealed that these proteins were associated with cellular process, metabolic process, and enriched catalytic activity compared to whole brassica proteins. The highest presented protein in Brassica rapa seedling leaf was RuBisCO, accounting for 11.56% of total leaf proteins. Also, many ribosomal proteins were identified. The relative amount of all ribosomal proteins comprised 8.47% of total leaf proteins. The relative amount of two RuBisCO and ribosomal proteins was about 20% of total leaf proteins. Thus to detect proteins presenting low abundance, additional fractionating procedure to remove RuBisCO and ribosomal proteins is required.

Citations

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  • Different Inhibitory Effects of Erythromycin and Chlortetracycline on Early Growth of Brassica campestris Seedlings
    Mi Sun Cheong, Hyeonji Choe, Myeong Seon Jeong, Young-Eun Yoon, Hyun Suk Jung, Yong Bok Lee
    Antibiotics.2021; 10(10): 1273.     CrossRef
  • Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways
    Young-Eun Yoon, Hyun Min Cho, Dong-won Bae, Sung Joong Lee, Hyeonji Choe, Min Chul Kim, Mi Sun Cheong, Yong Bok Lee
    Life.2020; 10(12): 311.     CrossRef
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Review Article

Phenotyping of Plants for Drought and Salt Tolerance Using Infra-Red Thermography
Taek-ryoun Kwon, Kyung-hwan Kim, Hae-Jin Yoon, Seung-kon Lee, Beom-ki Kim, Zamin Shaheed Siddiqui
Plant Breed. Biotech. 2015;3(4):299-307.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.299

Drought and salinity are the major environmental constrains in global agricultural production. Plant breeding for the drought and salt tolerance needs a proper assessment procedure to overcome stress constrain. Fundamental understanding on the physiological nature of the plant tolerance provides valuable information for the genetically modified crop’s development. Drought or salt stress induces several common physiological responses in plants such as water relation and photosynthetic capacitiy. It is because both stresses lead cellular dehydration in the plants, particularly, during the early phase of stress imposition. Drought and salinity decrease CO2 availability for photosynthesis via stomatal limitation as well as elevate leaf temperature due to partially closed stomata. In this scenario, stomatal regulation and plant water status are important aspects in abiotic stress environment. These physiological responses have a function to stabilize the temperature inside plant/leaf. Therefore phenotyping through an infra-red thermography (heat sensitive sensor), could be a useful tool in the selection of a tolerant genotypes. Infra-red thermography is a part of the electromagnetic spectrum which emits a certain amount of radiation as a function of their temperatures. In general, the plants which have less water, would have higher temperature and display more infra-red radiations. In abiotic stresses such as drought and salinity, plant water status is affected and varied from the sensitive to tolerant level. Infra-red images of plants are often linked with some of the physiological attributes to the tolerance. This review covers the limits, advantages, linkages, comparison and other prospectives of using thermal imagaes in modern phenotyping techniques.

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  • Artificial Intelligence (AI) in Detection of Abiotic Stress in Plants: A Review
    Anushree Matabber, Lionel Lami-Ndame Rhuhanga, Shinsuke Agehara, Maryam Mozafarian
    Sensors.2026; 26(4): 1122.     CrossRef
  • High throughput phenomics in elucidating drought stress responses in rice (Oryza sativa L.)
    S. Anand, R. L. Visakh, R. Nalishma, R. P. Sah, R. Beena
    Journal of Plant Biochemistry and Biotechnology.2025; 34(1): 119.     CrossRef
  • Functional phenotyping: Understanding the dynamic response of plants to drought stress
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    Current Plant Biology.2024; 38: 100331.     CrossRef
  • Water and Nutrient Recovery for Cucumber Hydroponic Cultivation in Simultaneous Biological Treatment of Urine and Grey Water
    Anna Wdowikowska, Małgorzata Reda, Katarzyna Kabała, Piotr Chohura, Anna Jurga, Kamil Janiak, Małgorzata Janicka
    Plants.2023; 12(6): 1286.     CrossRef
  • Field identification of drought tolerant wheat genotypes using canopy vegetation indices instead of plant physiological and biochemical traits
    Pengfei Wen, Yu Meng, Chenkai Gao, Xiaokang Guan, TongChao Wang, Wei Feng
    Ecological Indicators.2023; 154: 110781.     CrossRef
  • Improving Drought Tolerance in Mungbean (Vigna radiata L. Wilczek): Morpho-Physiological, Biochemical and Molecular Perspectives
    Chandra Mohan Singh, Poornima Singh, Chandrakant Tiwari, Shalini Purwar, Mukul Kumar, Aditya Pratap, Smita Singh, Vishal Chugh, Awdhesh Kumar Mishra
    Agronomy.2021; 11(8): 1534.     CrossRef
  • Sustainable effect of a symbiotic nitrogen‐fixing bacterium Sinorhizobium meliloti on nodulation and photosynthetic traits of four leguminous plants under low moisture stress environment
    Z.S. Siddiqui, F. Ali, Z. Uddin
    Letters in Applied Microbiology.2021; 72(6): 714.     CrossRef
  • High-throughput phenotyping platform for analyzing drought tolerance in rice
    Song Lim Kim, Nyunhee Kim, Hongseok Lee, Eungyeong Lee, Kyeong-Seong Cheon, Minsu Kim, JeongHo Baek, Inchan Choi, Hyeonso Ji, In Sun Yoon, Ki-Hong Jung, Taek-Ryoun Kwon, Kyung-Hwan Kim
    Planta.2020;[Epub]     CrossRef
  • Thermal Imaging for Plant Stress Detection and Phenotyping
    Mónica Pineda, Matilde Barón, María-Luisa Pérez-Bueno
    Remote Sensing.2020; 13(1): 68.     CrossRef
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Research Article

Rice Anther Protein Identification by Shotgun Proteomic Analysis
Joohyun Lee
Plant Breed. Biotech. 2015;3(3):264-273.   Published online September 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.3.264

Rice anthers from Nipponbare in the flowering stage were collected, proteins extracted and shotgun proteomic analysis conducted. From three biological replications, total 3,198 non-redundant rice anther proteins were identified. There was no bias of physiochemical properties in identified proteins. Proteins showing wide pI value range and molecular weight were identified. The lowest pI value was pH 3.93 (LOC_Os07g41694.1) and the highest was pH 12.48 (LOC_Os01g69020.1). Molecular weights of the identified proteins ranged from 5.2kDa (LOC_Os02g27769.1) to 486.0kDa (LOC_Os09g07300.1). Gene ontolgy enrichment analysis revealed that proteins associated with cellular and metabolic processes, catalytic activity, cell, cell parts, and organelles were enriched in rice anther, suggesting the status of proteins in rice anther were associated with pollen germination and pollen tube elongation. The highly abundant proteins in rice anther were pollen allergens, ATP synthase, glyceraldehyde-3-phosphate dehydrogenase, cupin domain containing proteins, and ascorbate peroxidase.

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Review Articles
Heritable Epigenetic Variation and its Potential Applications for Crop Improvement
Changqing Zhang, Tzung-Fu Hsieh
Plant Breed. Biotech. 2013;1(4):307-319.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.307

Phenotypic variation within organisms is driven primarily by genetic diversity. However, there is a growing appreciation that epigenetic variation, resulting from a multitude of diverse chemical modifications to the DNA and chromatin, can have profound effects on phenotype. Heritable epigenetic marks persist through meiosis and can be stably transmitted to the next generation, resulting in transgenerational epigenetic inheritance. Importantly, when epigenetic changes occur near coding genes, affecting their transcriptional state, heritable epigenetic variation can result in heritable phenotypic variation. Large-scale interrogation of epigenome inheritance in Arabidopsis has revealed that spontaneous variation in DNA methylation occurs at a rate that is orders of magnitude greater than genetic mutation, indicating the key importance of epigenetic variation during evolution. Thus, there is a potential for epigenetics to play a role in crop improvement, including regulation of transgene expression and creation of novel epialleles. Here, we review cases of naturally occurring and genetically induced epialleles, and discuss how the studies from two epigenetic populations are rapidly increasing our understanding of epigenetic diversity.

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    Discover Plants.2025;[Epub]     CrossRef
  • Characterizing sorghum genotypes for forage yield, hydrocyanic acid and sugar contents under arid climate conditions
    Ahmad Sher, Sami Ul-Allah, Abdul Sattar, Lorenzo Barbanti, Muhammad Ijaz
    Plant Genetic Resources: Characterization and Utilization.2023; 21(4): 377.     CrossRef
  • Regulation of plant epigenetic memory in response to cold and heat stress: towards climate resilient agriculture
    Shamsur Rehman, Zishan Ahmad, Muthusamy Ramakrishnan, Ruslan Kalendar, Qiang Zhuge
    Functional & Integrative Genomics.2023;[Epub]     CrossRef
  • Advances in DNA methylation and demethylation in medicinal plants: a review
    Yimei Zang, Lei Xie, Jiaxian Su, Zuliang Luo, Xunli Jia, Xiaojun Ma
    Molecular Biology Reports.2023; 50(9): 7783.     CrossRef
  • Morphological and molecular divergence in ornamental variants of cactus which may be useful to generate new variants
    Andréa Florindo das Neves, Claudete Aparecida Mangolin, Vanessa Neves de Azevedo Fernandes, Eliane Rodrigues Monteiro, Maria de Fátima P. S. Machado
    Plant Genetic Resources: Characterization and Utilization.2022; 20(4): 290.     CrossRef
  • Molecular and genetic bases of heat stress responses in crop plants and breeding for increased resilience and productivity
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    Journal of Experimental Botany.2020; 71(13): 3780.     CrossRef
  • Towards Exploitation of Adaptive Traits for Climate-Resilient Smart Pulses
    Jitendra Kumar, Arbind K. Choudhary, Debjyoti Sen Gupta, Shiv Kumar
    International Journal of Molecular Sciences.2019; 20(12): 2971.     CrossRef
  • Abnormalities in somatic embryogenesis caused by 2,4-D: an overview
    Claudia Garcia, Alex-Alan Furtado de Almeida, Marcio Costa, Dahyana Britto, Raúl Valle, Stefan Royaert, Jean-Philippe Marelli
    Plant Cell, Tissue and Organ Culture (PCTOC).2019; 137(2): 193.     CrossRef
  • Transgenerational Perpetuation of CHS Gene Expression and DNA Methylation Status Induced by Short Oligodeoxynucleotides in Flax (Linum usitatissimum)
    Magdalena Dzialo, Jan Szopa, Agata Hnitecka, Magdalena Zuk
    International Journal of Molecular Sciences.2019; 20(16): 3983.     CrossRef
  • Small RNA-based prediction of hybrid performance in maize
    Felix Seifert, Alexander Thiemann, Tobias A. Schrag, Dominika Rybka, Albrecht E. Melchinger, Matthias Frisch, Stefan Scholten
    BMC Genomics.2018;[Epub]     CrossRef
  • Evaluation of Factors Indicating Epigenetic Polymorphism through Population of Maize Seedlings
    A. P. Kravets, D. A. Sokolova
    Cytology and Genetics.2018; 52(3): 174.     CrossRef
  • Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues
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    Trends in Plant Science.2017; 22(7): 610.     CrossRef
  • Fifteen years of quantitative trait loci studies in fish: challenges and future directions
    David T. Ashton, Peter A. Ritchie, Maren Wellenreuther
    Molecular Ecology.2017; 26(6): 1465.     CrossRef
  • Plant Stress Responses and Phenotypic Plasticity in the Epigenomics Era: Perspectives on the Grapevine Scenario, a Model for Perennial Crop Plants
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    Frontiers in Plant Science.2017;[Epub]     CrossRef
  • New insights into plant somatic embryogenesis: an epigenetic view
    Vijay Kumar, Johannes Van Staden
    Acta Physiologiae Plantarum.2017;[Epub]     CrossRef
  • Epigenetic mechanisms regulating seed germination rate
    O. P. Kravets, D. O. Sokolova
    Cytology and Genetics.2017; 51(5): 346.     CrossRef
  • Genetic and Epigenetic Approaches for the Possible Detection of Adulteration and Auto-Adulteration in Saffron (Crocus sativus L.) Spice
    Giovanna Soffritti, Matteo Busconi, Rosa Sánchez, Jean-Marie Thiercelin, Moschos Polissiou, Marta Roldán, José Fernández
    Molecules.2016; 21(3): 343.     CrossRef
  • Nongenetic Inheritance of Induced Resistance in a Wild Annual Plant
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    Phytopathology®.2016; 106(8): 877.     CrossRef
  • Epigenome Editing of Potato by Grafting Using Transgenic Tobacco as siRNA Donor
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    PLOS ONE.2016; 11(8): e0161729.     CrossRef
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    PLOS ONE.2015; 10(4): e0123434.     CrossRef
  • Correlating aluminium toxicity, heterosis and epigenetic mechanisms in maize yield improvement in acid soils
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    Biotechnology and Molecular Biology Reviews.2015; 10(2): 12.     CrossRef
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Molecular Genetic Aspects of Self-incompatibility in Brassicaceae
Hee-Jeong Jung, Nasar Uddin Ahmed, Jong-In Park, Mi-Young Chung, Yong-Gu Cho, Ill-Sup Nou
Plant Breed. Biotech. 2013;1(3):205-217.   Published online September 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.3.205

Molecular genetic studies of self-incompatibility (SI) are the most accentuating part in the way of advancement of reproductive mechanisms in flowering plants. In the Brassicaceae plants, self-incompatibility has been mapped genetically to a single chromosomal location where several closely linked genes have been identified. Recently, various studies have provided a novel insight into the basis of specificity in the S-receptor kinase (SRK) and S-locus protein 11 or S-locus Cysteine-rich (SP11/SCR) interaction, the nature of the signaling cascade that culminates in the inhibition of ‘self’ pollen, and the physiological and morphological changes that are associated with transitions between the outbreeding and inbreeding modes of mating in the Brassicaceae. In this review, we discuss the current view of the molecular genetic aspects of the self-incompatibility in Brassicaceae.

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  • Progress on deciphering the molecular aspects of cell-to-cell communication in Brassica self-incompatibility response
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    3 Biotech.2018;[Epub]     CrossRef
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