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Research Articles

Estimates of Genetic Parameters in Bambara Groundnut {Vigna subterranea (L.) VERDC.}
Nwakuche Chinenye Onwubiko, Michael Ifeanyi Uguru, Grace Ovute Chimdi
Plant Breed. Biotech. 2019;7(4):295-301.   Published online December 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.4.295

Field evaluation of 33 Bambara groundnut lines were carried out to estimate genetic variability, heritability and genetic advance. One-way analysis of variance (ANOVA) result showed significant differences for 14 of the 17 agronomic traits studied. The results on the variance components revealed that phenotypic variance had values (vigour index 2.30, pod length 10.09, seed length 1.64) that were slightly higher than the respective genotypic variance (vigour index 1.68, pod length 9.88, seed length 0.26). Similarly, the values (number of branches 41.91, number of nodes 68.72, internode length 59.02) of phenotypic coefficient of variation (PCV) were slightly higher than the corresponding genotypic coefficient of variation (GCV) (number of branches 40.11, number of nodes 66.98, internode length 57.31), suggesting a substantial genetic variability that can serve as a base for Bambara groundnut improvement. High estimates of heritability were observed for most characters like number of branches (95.70%), number of nodes (97.46%), internode length (97.10%), pod length (97.91%), and seed length (93.79%). Likewise, genetic advance values for most traits were high, pod length (201), number of nodes (200), internode length (200), number of branches (197) and seed yield (195), implying that improvement of seed yield in Bambara groundnut can be achieved through direct selection.

Citations

Citations to this article as recorded by  
  • Combining ability and gene action in Bambara groundnut (Vigna subterranea (L.) Verdc.) genotypes for agronomic traits
    Nomathemba Gloria Majola, Hussein Shimelis, Abe Shegro Gerrano, Jacob Mashilo
    Euphytica.2025;[Epub]     CrossRef
  • Genetic Analysis and Variability Assessment of Bambara Groundnut (Vigna subterranea L.) Lines Based on Vegetative Traits
    Atiqullah Khaliqi, Ahmad Jawid Pouyesh, Mohd Y Rafii, Md Mahmudul Hasan Khan
    Journal of Natural Science Review .2025; 3(1): 141.     CrossRef
  • Unveiling Genetic Diversity, Characterization, and Selection of Bambara Groundnut (Vigna subterranea L. Verdc) Genotypes Reflecting Yield and Yield Components in Tropical Malaysia
    Md Mahmudul Hasan Khan, Mohd Y. Rafii, Shairul Izan Ramlee, Mashitah Jusoh, Yusuff Oladosu, Md Al Mamun, Atiqullah Khaliqi, Fengjie Sun
    BioMed Research International.2022;[Epub]     CrossRef
  • Hereditary analysis and genotype × environment interaction effects on growth and yield components of Bambara groundnut (Vigna subterranea (L.) Verdc.) over multi-environments
    Md Mahmudul Hasan Khan, Mohd Y. Rafii, Shairul Izan Ramlee, Mashitah Jusoh, Md Al Mamun
    Scientific Reports.2022;[Epub]     CrossRef
  • Genetic parameters and selection strategies for soybean progenies aiming at precocity and grain productivity
    Josef Gastl Filho, Osvaldo Toshiyuki Hamawaki, Ana Paula Oliveira Nogueira, Carolina Oliveira da Silva, Raphael Lemes Hamawaki, Cristiane Divina Lemes Hamawaki
    Ciência e Agrotecnologia.2022;[Epub]     CrossRef
  • Genetic Analysis and Selection Criteria in Bambara Groundnut Accessions Based Yield Performance
    Atiqullah Khaliqi, Mohd Y. Rafii, Norida Mazlan, Mashitah Jusoh, Yusuff Oladosu
    Agronomy.2021; 11(8): 1634.     CrossRef
  • Genetic analysis and selection of Bambara groundnut (Vigna subterranea [L.] Verdc.) landraces for high yield revealed by qualitative and quantitative traits
    Md Mahmudul Hasan Khan, Mohd Y. Rafii, Shairul Izan Ramlee, Mashitah Jusoh, Md Al Mamun
    Scientific Reports.2021;[Epub]     CrossRef
  • Genetic Diversity and Environmental Influence on Growth and Yield Parameters of Bambara Groundnut
    Oluwaseyi Samuel Olanrewaju, Olaniyi Oyatomi, Olubukola Oluranti Babalola, Michael Abberton
    Frontiers in Plant Science.2021;[Epub]     CrossRef
  • Development of Selection Indices for Improvement of Seed Yield and Lipid Composition in Bambara Groundnut (Vigna subterranea (L.) Verdc.)
    Razlin Azman Halimi, Carolyn A. Raymond, Bronwyn J. Barkla, Sean Mayes, Graham J. King
    Foods.2021; 11(1): 86.     CrossRef
  • Genetic diversity in Bambara groundnut {Vigna subterranea (L.) Verdc.}
    Nwakuche Chinenye Onwubiko
    Agricultura Tropica et Subtropica.2021; 54(1): 89.     CrossRef
  • Genetic Variability, Heritability, and Clustering Pattern Exploration of Bambara Groundnut (Vigna subterranea L. Verdc) Accessions for the Perfection of Yield and Yield‐Related Traits
    Md Mahmudul Hasan Khan, Mohd Y. Rafii, Shairul Izan Ramlee, Mashitah Jusoh, Al Mamun, Yue Sheng
    BioMed Research International.2020;[Epub]     CrossRef
  • Enhancing the Nutritional Profile of Noodles With Bambara Groundnut (Vigna subterranea) and Moringa (Moringa oleifera): A Food System Approach
    Hilda Hussin, Peter J. Gregory, Advina L. Julkifle, Gomathy Sethuraman, Xin Lin Tan, Fadhil Razi, Sayed N. Azam-Ali
    Frontiers in Sustainable Food Systems.2020;[Epub]     CrossRef
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DNA Barcoding for Efficient Identification of Triticum Subspecies: Evaluation of Four Candidate Loci on Phylogenetic Relationships
Sebastin Raveendar, Gi-An Lee, Kyung Jun Lee, Myoung-Jae Shin, Seong Hoon Kim, Jung-Ro Lee, Gyu-Taek Cho, Do Yoon Hyun
Plant Breed. Biotech. 2019;7(3):220-228.   Published online September 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.3.220

Since traditional taxonomic studies possess intrinsic limitations with plant species identification, combinations of DNA barcodes have been considered a powerful tool to discover undetected genetic variation within species across large geographic areas, providing more precise estimates of biodiversity. However, the lack of efficient and universal markers is often considered a peculiar challenge in molecular taxonomic studies across plant taxa. Similarly, many loci have been proposed for DNA barcodes; still standardizing regions as a DNA barcode is vital for making them efficiently discriminate plant species. In this study, we tested the phylogenetic utility of nuclear (nrDNA) region (ITS2) with chloroplast (cpDNA) regions (matK, psbA-trnH, and rbcL) for efficient discrimination of Triticum species. A total of 109 accessions representing 16 recognized genotypes in the Triticum genus have been sampled to assess the efficiency of barcoding loci to resolve species discrimination. As expected from earlier studies, our results also revealed that a single locus has difficulty in discriminating Triticum species. Species discrimination in Triticum taxa was martially improved by using a combination of gene loci; however, the closely related species, T. aestivum and T. turgidum, had no DNA barcode to separate them. Thus, we recommend further research on finding species-specific SNP using intragenic regions as standard DNA barcode loci in Poaceae.

Citations

Citations to this article as recorded by  
  • Valorizing Traditional Greek Wheat Varieties: Phylogenetic Profile and Biochemical Analysis of Their Nutritional Value
    Niki Mougiou, Spyros Didos, Ioanna Bouzouka, Athina Theodorakopoulou, Michael Kornaros, Ioannis Mylonas, Anagnostis Argiriou
    Agronomy.2023; 13(11): 2703.     CrossRef
  • Multilocus marker-based delimitation of Salicornia persica and its population discrimination assisted by supervised machine learning approach
    Rahul Jamdade, Khawla Al-Shaer, Mariam Al-Sallani, Eman Al-Harthi, Tamer Mahmoud, Sanjay Gairola, Hatem A. Shabana, Branislav T. Šiler
    PLOS ONE.2022; 17(7): e0270463.     CrossRef
  • In vitro propagation for conservation and genetic fidelity of the near threatened Dimocarpus longan plant
    Manal El-salato Ala El-naby Ahmed
    Journal of Genetic Engineering and Biotechnology.2022; 20(1): 130.     CrossRef
  • Association analysis and evaluation of genetic diversity in wheat genotypes using SSR markers
    S. Farhangian-kashani, A. Azadi, Sh. Khaghani, M. Changizi, M. Gomarian
    Biologia Futura.2021; 72(4): 441.     CrossRef
  • Genotyping-by-Sequencing Derived Single Nucleotide Polymorphisms Provide the First Well-Resolved Phylogeny for the Genus Triticum (Poaceae)
    Do Yoon Hyun, Raveendar Sebastin, Kyung Jun Lee, Gi-An Lee, Myoung-Jae Shin, Seong Hoon Kim, Jung-Ro Lee, Gyu-Taek Cho
    Frontiers in Plant Science.2020;[Epub]     CrossRef
  • In vitro propagation and DNA barcode analysis of the endangered Silene schimperiana in Saint Katherine protectorate
    Heba El-Sayed Ghareb, Shafik Darwish Ibrahim, Ghada Abd El-Moneim Hegazi
    Journal of Genetic Engineering and Biotechnology.2020; 18(1): 41.     CrossRef
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Potential use of ITS2 and matK as a Two-Locus DNA Barcode for Identification of Vicia Species
Sebastin Raveendar, Jung-Ro Lee, Jae-Wan Park, Gi-An Lee, Young-Ah Jeon, Yun Jeong Lee, Gyu-Taek Cho, Kyung-Ho Ma, Sok-Young Lee, Jong-Wook Chung
Plant Breed. Biotech. 2015;3(1):58-66.   Published online March 31, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.1.058

We investigated the species discriminatory efficiency of the proposed plant barcoding loci ITS2 and matK in Vicia species. In 2011, China Plant BOL Group proposed the addition of nuclear ITS2 to matK be accepted as a 2-locus DNA barcode to classify plant species. The matK region was chosen as a DNA barcode because of its effective species discriminating power, high quality sequence recovery, and easy experimental analysis. Integration of matK sequences into Vicia phylogeny could improve phylogenetic reconstruction of this species. To assess the ability of barcoding loci to resolve Vicia species, we sampled 36 of the taxonomically best known groups in the genus. Topologies of the phylogenetic trees based on ITS2 and matK analyses were similar but a few accessions were placed into distant phylogenetic groups. Neither ITS2 nor matK analyses alone could discriminate some closely related Vicia species. Thus, we have proposed a concatenated data approach to increase the resolving power of ITS2 and used matK as an additional tool for phylogenetic analysis in Vicia because characterization of the nucleotide sequences of the matK region was easier to recover and more cost-effective than those of the ITS region.

Citations

Citations to this article as recorded by  
  • Deep learning for Fabaceae identification by integrating molecular and morphological data and a solution for barcode selection
    Kawtar Lhayani, Karim Rabeh, Leila Medraoui
    Journal of Systematics and Evolution.2026; 64(2): 229.     CrossRef
  • Rapid Specific PCR Detection Based on THCAS and CBDAS for the Prediction of Cannabis sativa Chemotypes: Drug, Fiber, and Intermediate
    Patwira Boonjing, Worakorn Wiwatcharakornkul, Chayapol Tungphatthong, Taksina Chuanasa, Somchai Keawwangchai, Tae-Jin Yang, Wanchai De-Eknamkul, Suchada Sukrong
    International Journal of Molecular Sciences.2025; 26(11): 5077.     CrossRef
  • DNA-Based Identification of Eurasian Vicia Species Using Chloroplast and Nuclear DNA Barcodes
    Irene Bosmali, Georgios Lagiotis, Nadia Haider, Maslin Osathanunkul, Costas Biliaderis, Panagiotis Madesis
    Plants.2022; 11(7): 947.     CrossRef
  • Interspecific variation of seed morphological and micro‐morphological traits in the genus Vicia (Fabaceae)
    Seahee Han, Raveendar Sebastin, Kyung Jun Lee, XiaoHan Wang, Myoung‐Jae Shin, Seong‐Hoon Kim, Sookyeong Lee, Jung‐Ro Lee, Gyu‐Taek Cho, Do Yoon Hyun, Jong‐Wook Chung
    Microscopy Research and Technique.2021; 84(2): 337.     CrossRef
  • Identification of Vicia Species Native to South Korea Using Molecular and Morphological Characteristics
    Seahee Han, Raveendar Sebastin, XiaoHan Wang, Kyung Jun Lee, Gyu-Taek Cho, Do Yoon Hyun, Jong-Wook Chung
    Frontiers in Plant Science.2021;[Epub]     CrossRef
  • Comparative Genetic Analysis between the Jeju ‘Inchangkyool’ and Chinese ‘Ichangensis’ (Citrus ichangensis) using Internal Chloroplast trnL-trnF Intergenic Spacers and Transcribed Spacer Sequence Regions
    Min Ju Kim, Mi Sun Kim, Kihye Shin, Sukman Park, Cheolwoo Choi, Su Hyun Yun, Seong Beom Jin
    Korean Journal of Breeding Science.2021; 53(1): 16.     CrossRef
  • Recent advances of novel technologies for quality consistency assessment of natural herbal medicines and preparations
    Xi-Chuan Wei, Bo Cao, Chuan-Hong Luo, Hao-Zhou Huang, Peng Tan, Xiao-Rong Xu, Run-Chun Xu, Ming Yang, Yi Zhang, Li Han, Ding-Kun Zhang
    Chinese Medicine.2020;[Epub]     CrossRef
  • Comparative efficacy of four candidate DNA barcode regions for identification of Vicia species
    Sebastin Raveendar, Jung-Ro Lee, Donghwan Shim, Gi-An Lee, Young-Ah Jeon, Gyu-Taek Cho, Kyung-Ho Ma, Sok-Young Lee, Gi-Ho Sung, Jong-Wook Chung
    Plant Genetic Resources.2017; 15(4): 286.     CrossRef
  • Editorial: Food Legume Diversity and Legume Research Policies
    Matthew W. Blair, Jing Wu, Shumin Wang
    The Crop Journal.2016; 4(5): 339.     CrossRef
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Review Article

Utility of DNA Barcoding for Plant Biodiversity Conservation
Dhivya Selvaraj, Jong-In Park, Mi-Young Chung, Yong-Gu Cho, Sathishkumar Ramalingam, Ill-Sup Nou
Plant Breed. Biotech. 2013;1(4):320-332.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.320

DNA barcoding is a technique that provides rapid identification of species without using morphological cues. The method employs relatively small-standardized DNA fragments as tags to define or discover species. In plants, the mitochondrial genome evolves much more slowly than in animals. There is currently no consensus on which candidate markers comprise the best plant DNA barcoding region; however, DNA barcodes such as rbcL, matK, psbA-trnH and ITS have been proposed for the plant kingdom. And also very recently the chloroplast intergenic spacer (IGS) like trnE-trnT, trnT-psbD, ndhF-rpl32 and rpl14-rpl16 were also employed for discriminating the cultivar species. The region ITS2 showed better intra-species variation, followed by psbA-trnH. Several analyses reveal that the ITS2 region is able to distinguish all tested species of the plant kingdom, but evaluations of DNA barcodes have to be conducted for more species covering many genera to confirm the above results. In this review we discussed the current view of DNA barcoding.

Citations

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  • Genetic fingerprints of flora: revolutionizing plant identification with DNA barcoding
    Maqsooda Perveen, Suhail Ashraf, Khalid Z. Masoodi
    Genetic Resources and Crop Evolution.2026;[Epub]     CrossRef
  • DNA Barcoding for Managing Blackberry Genetic Resources on Black Sea Coast (Russia)
    Igor Yu. Zhuravlev, Anton V. Korzhuk, Elena S. Tyurina, Nadezhda A. Dobarkina, Elena N. Markova, Evgenija I. Gereeva, Ioanna M. Protasova, Mikhail T. Menkov, Irina V. Rozanova, Lilija Yu. Shipilina, Elena K. Khlestkina, Alexey S. Rozanov
    Diversity.2025; 17(12): 869.     CrossRef
  • Molecular identification and evaluation of yield and grain quality of buckwheat varieties in Vietnam
    Linh Hong Ta, Duc Thanh Pham, Yen Thi Hoang Le, Trung Duc Tran, Ha Thi Thu Pham, Trung Thanh Nguyen, Tram Bao Tran, Tao Xuan Vu
    Vegetos.2025;[Epub]     CrossRef
  • DNA barcodes in Egyptian olive cultivars (Olea europaea L.) using the rbcL and matK coding sequences
    Eglal M. Said, M. E. Hassan
    Journal of Crop Science and Biotechnology.2023; 26(4): 447.     CrossRef
  • Filling gaps of reference DNA barcodes in Syzygium from rainforest fragments in Sumatra
    Ridha Wati, Fitri Yola Amandita, Fabian Brambach, Iskandar Z. Siregar, Oliver Gailing, Carina Carneiro de Melo Moura
    Tree Genetics & Genomes.2022;[Epub]     CrossRef
  • Morphological and Molecular Characterization of Some Egyptian Six-Rowed Barley (Hordeum vulgare L.)
    Azza H. Mohamed, Ahmad A. Omar, Ahmed M. Attya, Mohamed M. A. Elashtokhy, Ehab M. Zayed, Rehab M. Rizk
    Plants.2021; 10(11): 2527.     CrossRef
  • Botanical origin authentication of dietary supplements by DNA‐based approaches
    Liliana Grazina, Joana S. Amaral, Isabel Mafra
    Comprehensive Reviews in Food Science and Food Safety.2020; 19(3): 1080.     CrossRef
  • HRM analysis targeting ITS1 and matK loci as potential DNA mini-barcodes for the authentication of Hypericum perforatum and Hypericum androsaemum in herbal infusions
    Joana Costa, Bruna Campos, Joana S. Amaral, M. Eugénia Nunes, M. Beatriz P.P. Oliveira, Isabel Mafra
    Food Control.2016; 61: 105.     CrossRef
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  • 8 Crossref
Research Article

Grain development has been shown to involve a complex series of physiological and molecular events. In order to provide information on molecular events during grain development, we isolated four noble genes, HvSAMS1, 2, 3 and 4 (Hordeum vulgare S-AdenosylMethionine Synthetase1, 2, 3 and 4). The four HvSAMS genes were closely related based on peptide comparisons and sequence homologies that ranged from 89% to 99%. To determine the developmental expression of HvSAMS genes, Northern blot analysis and RT-PCR were performed with the kernels of −3 to 30 days after fertilization (DAF). The transcripts of HvSAMS1 and 3 genes peaked at −3 DAF that lasted until 7 DAF, and started to reduce at 10 DAF. A strong expression signal of HvSAMS2 was detected from −3 DAF and reached the maximum level at 3 DAF, then decreased until 30 DAF. The expression of HvSAMS4 initially elevated from −3 DAF, reaching the peak at 10 DAF, and decreased gradually until 30 DAF. The HvSAMS gene transcripts were accumulated abundantly in grains, stems and leaves. To evaluate subcellular localization molecular functions of HvSAMS1 gene, we transformed the HvSAMS1 gene into onion epidermal cell and Arabidopsis. Expression of HvSAMS1 recognized by 35S::HvSAMS1::GFP was detected in the nucleus and slightly in the cytosol, whereas 35S::GFP expressed throughout the cell. The transgenic lines showed slightly early germination on MS-medium containing 1 μM GA3 coupled with accelerated extension of bolts. The HvSAMS genes were dominantly expressed in grains during grain development (3 DAF). The HvSAMS genes showed various transcript accumulations in response to the abiotic stresses and exogenous application of phytohormones. Especially, HvSAMS genes were regulated by exogenous GA3. The subcellular localization of HvSAMS1 and histochemical localization of HvSAMS2 promoter provided opportunities to elucidate their possible cellular functions. The phenotypic attributes displayed by HvSAMS1 overexpressing transgenic plants suggested the role of HvSAMS1 in the germination and GA3 response mechanism.

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    Maymouneh Rabie, Salma Khazaal, Mayyas M. Othman, Elie Salem Sokhn, Espérance Debs, Suhair Sunoqrot, Bilal Azakir, Nicolas Louka, Nada El Darra
    Foods.2026; 15(4): 637.     CrossRef
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    BMC Plant Biology.2024;[Epub]     CrossRef
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    Man Bo Lee, Jae Yoon Kim
    Journal of Plant Biochemistry and Biotechnology.2024; 33(2): 189.     CrossRef
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