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"Mutant"

Research Articles
Identifying a Candidate Mutation Underlying a Reduced Cuticle Wax Mutant of Rice Using Targeted Exon Capture and Sequencing
HyunJung Kim, Thomas H. Tai
Plant Breed. Biotech. 2019;7(1):1-11.   Published online March 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.1.1

Aerial surfaces of terrestrial plants are protected from the uncontrolled loss of water and gas by the cuticle, a membrane of fatty acid polymers on the outer surface of epidermal cells. Composed of cutin and waxes, the cuticle protects against a wide range of external stresses and has an important role in plant development and reproduction. Plants with reduced cuticular waxes often exhibit glossy, bright green leaves, which in rice are only observed in the presence of water adhesion. In this study, a wet leaf/glossy (wlg) mutant KDS-2249D was subjected to targeted exon capture and sequencing to identify candidate mutations. A single nonsynonymous, homozygous mutation was found in the KDS-2249D mutant. The mutation (G1080A) is predicted to change a tryptophan at position 360 to a stop codon in the Glossy1-like-1/wax crystal-sparse leaf 2 gene. This mutation completely co-segregated with the wlg phenotype in an F2 mapping population (n = 435) and the KDS-2249D mutant exhibited a 40–50% decrease in total wax and significant increase in membrane permeability. This mutant will be useful for studies examining the role of cuticle waxes in protecting rice plants from environmental stresses.

Citations

Citations to this article as recorded by  
  • Identification of a novel mutant allele of the LIKE EARLY STARVATION 1 gene in rice (Oryza sativa L.) using QTL-seq
    Kyu-Chan Shim, HyunJung Kim, Mi-Ra Yoon, Sung-Ho Na, Sa-Eun Park, Sang-Nag Ahn, Thomas H Tai, J Holland
    G3: Genes, Genomes, Genetics.2026;[Epub]     CrossRef
  • Comparative Genomic Analysis and Functional Identification of CER1 and CER3 Homologs in Rice Wax Synthesis
    Nesma E. E. Youssif, Bowen Yang, Haodong Huang, Mohamed Hamdy Amar, Mohamed Ezzat, Mohammad Belal, Sanaa A. M. Zaghlool, Huayan Zhao, Dong Fu, Shiyou Lü
    Biology.2026; 15(2): 166.     CrossRef
  • Identification and bioinformatic characterization of rare variants of Rhododendron canescens architecture genes
    Lav K. Yadav, H. Dayton Wilde
    Euphytica.2022;[Epub]     CrossRef
  • Identification of Rice Mutants with Altered Grain Alkali Digestion Trait
    HyunJung Kim, Ralph Vin B. Imatong, Thomas H. Tai
    Plant Breeding and Biotechnology.2020; 8(1): 19.     CrossRef
  • Deciphering the Novel Role of AtMIN7 in Cuticle Formation and Defense against the Bacterial Pathogen Infection
    Zhenzhen Zhao, Xianpeng Yang, Shiyou Lü, Jiangbo Fan, Stephen Opiyo, Piao Yang, Jack Mangold, David Mackey, Ye Xia
    International Journal of Molecular Sciences.2020; 21(15): 5547.     CrossRef
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Fruit Quality and Chemical Contents of Hybrid Boysenberry (Rubus ursinus) Lines Developed by Hybridization and Gamma Irradiation
Jaihyunk Ryu, Soon-Jae Kwon, Yeong Deuk Jo, Hong-Il Choi, Kyung-Yun Kang, Bo mi Nam, Dong-Gun Kim, Chang-Hyun Jin, Jin-Baek Kim, Ee-Yup Kim, Seung Cheol Oh, Bo-Keun Ha, Si-Yong Kang
Plant Breed. Biotech. 2017;5(3):228-236.   Published online September 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.3.228

The Rubus fruit is an economically important berry crop that contains various functional compounds. The
objective
of this study was to analyze fruit qualities (i.e., pH, soluble solids content, titratable acidity, and mineral content) as well as fatty acid and phenolic compounds (i.e., ellagic acid and anthocyanins) among hybrid boysenberry lines developed by hybridization and gamma irradiation. There were no significant differences in the hybrid boysenberry fruit pH and titratable acidity (%) among the tested genotypes. However, the soluble solids content was higher in the BSA119 and BSA144 mutants than in the original genotype (BS_Hybrid). Meanwhile, linoleic acid was the most abundant fatty acid in the analyzed hybrid boysenberry fruits. The fatty acid composition did not differ significantly among the genotypes. The ellagic acid content of all genotypes ranged from 8.72 mg/100 g to 46.10 mg/100 g, with the highest concentration observed for the BSB127 genotype. Additionally, cyanidin-3-O-sophoroside (M-H+, 611 m/z) and cyanidin-3-O-glucoside (M-H+, 449 m/z) were the two major anthocyanins detected in the boysenberry and mutant genotypes, while cyanidin-3-O-glucoside was the predominant blackberry anthocyanin. The total anthocyanin concentrations of four mutant genotypes (i.e., BSA036, BSA078, BSA101, and BSB127) were significantly higher than that of the original genotype (382.0 mg/100 g). The highest total anthocyanin concentration was observed for the BSA078 genotype (467.9 mg/100 g). These results may be useful for identifying the optimal genotypes for breeding new cultivars with enhanced qualities and potential health benefits.

Citations

Citations to this article as recorded by  
  • Extreme transgressive segregation for rhoifolin reveals breeding potential in strawberry F1 hybrids
    José G. Vallarino, Luca Mazzoni, Rohullah Qaderi, Franco Capocasa, Sonia Osorio, Bruno Mezzetti
    Food Chemistry.2026; 518: 149508.     CrossRef
  • Evaluation of Anthocyanin Profiling, Total Phenolic and Flavonoid Content, and Antioxidant Activity of Korean Rubus Accessions for Functional Food Applications and Breeding
    Juyoung Kim, Jaihyunk Ryu, Seung Hyeon Lee, Jae Hoon Kim, Dong-Gun Kim, Tae Hyun Ha, Sang Hoon Kim
    Antioxidants.2025; 14(8): 1012.     CrossRef
  • Enhancing the terpenoid and flavonoid profiles and fruit quality in an elite Chinese bayberry line through hybridization
    Mostafa Saeed, Mohamed A. Elsadek, Zhuyun Chen, Lan Zhao, Guoyun Wang, Chaochao Zhou, Deli Sun, Zhongshan Gao, Yun Jiao
    Food Chemistry.2025; 479: 143784.     CrossRef
  • The Role of Silver Nanoparticles in Response of In Vitro Boysenberry Plants to Drought Stress
    Sevinç Şener, Hülya Sayğı
    Horticulturae.2023; 9(11): 1177.     CrossRef
  • Bioactive compounds, bromatological and mineral characterization of blackberries in a subtropical region
    Maria Cristina Copello Rotili, Fabíola Villa, Daniel Fernandes da Silva, Solivan Rosanelli, Gilberto Costa Braga, Giovana Ritter
    Revista Ceres.2022; 69(1): 13.     CrossRef
  • Improved nutritional quality in fruit tree species through traditional and biotechnological approaches
    Silvia Sabbadini, Franco Capocasa, Maurizio Battino, Luca Mazzoni, Bruno Mezzetti
    Trends in Food Science & Technology.2021; 117: 125.     CrossRef
  • Phenolic Compound Content of Leaf Extracts from Different Roselle (Hibiscus sabdariffa) Accessions
    Jae Il Lyu, Jung Min Kim, Dong-Gun Kim, Jin-Baek Kim, Sang Hoon Kim, Joon-Woo Ahn, Si-Yong Kang, Jaihyunk Ryu, Soon-Jae Kwon
    Plant Breeding and Biotechnology.2020; 8(1): 1.     CrossRef
  • Genotyping-by-sequencing based single nucleotide polymorphisms enabled Kompetitive Allele Specific PCR marker development in mutant Rubus genotypes
    Jaihyunk Ryu, Woon Ji Kim, Juhyun Im, Sang Hun Kim, Kang-Seop Lee, Han-Jig Jo, Ee-Youb Kim, Si-Yong Kang, Jeong-Hee Lee, Bo-Keun Ha
    Electronic Journal of Biotechnology.2018; 35: 57.     CrossRef
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Biochemical Responses of Soybean (Glycine max L. Merr.) to Proton Beam Irradiation
Juhyun Im, Jonghan Ko, Han-Yong Kim, Bo-Keun Ha
Plant Breed. Biotech. 2017;5(2):97-105.   Published online June 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.2.97

The present study evaluated the biochemical effects of proton beam irradiation in soybean. Seeds of two Korean elite cultivars (Kwangan and Pungsannamul) were irradiated by a 57-MeV proton beam in the range of 50–400 Gy. We measured the contents of malondialdehyde (MDA), antioxidant enzymes, and chlorophyll. MDA contents in proton beam-irradiated plants were higher than those in control plants. The activity of antioxidant enzymes differed between the two cultivars. In Kwangan, ascorbate peroxidase (APX) activity increased by 29% relative to the control at 55 Gy and decreased by 58% at 308 Gy. Superoxide dismutase (SOD) and peroxidase (POD) activities decreased by 47 and 25% relative to the control at 55 Gy and recovered to 87 and 56% of that at 55 Gy with 172 Gy and 117 Gy, respectively. In Pungsannamul, APX and SOD decreased by 32 and 35% relative to the control at 62 Gy, with the highest value observed at 243 Gy. In terms of the chlorophyll content, the two varieties responded similarly to proton beam irradiation, whereas in Kwangan, no significant reduction was observed above 100 Gy when compared with the control. Proton beam irradiation affected chlorophyll b more than chlorophyll a. These results show that the activity of antioxidant enzymes decreased in response to irradiation with approximately 50 Gy proton beams, then increased gradually with increasing doses, followed by a moderate decrease at higher doses. According to correlation with MDA contents and antioxidant enzyme activities, defense system of Pungsannamul was less activated by proton-beam irradiation than that of Kwangan.

Citations

Citations to this article as recorded by  
  • Growth and biological responses of soybean cultivars to gamma-ray and electron beam irradiation
    Jeong Woo Lee, Jung Min Kim, Dae June Kim, Jin-Mun Yun, Jin-Baek Kim, Min Jeong Hong, Chan Seop Ko, Joon-Woo Ahn, Bo-Keun Ha, Soon-Jae Kwon
    International Journal of Radiation Biology.2026; 102(5): 520.     CrossRef
  • Morpho-anatomical and biochemical plasticity of chia (Salvia hispanica L.) microgreens following heavy-ion seed irradiation
    Sara De Francesco, Chiara Amitrano, Ermenegilda Vitale, Walter Tinganelli, Marco Durante, Stefania De Pascale, Carmen Arena, Veronica De Micco
    Plant Physiology and Biochemistry.2026; 237: 111517.     CrossRef
  • Identification and quantification of soybean 11S and 7S globulins using RP-UPLC
    Eun-Seo Cho, Sewon Kim, Jung-Kyung Moon, Soo-Kwon Park, Nobuyuki Maruyama, Shaodong Wang, Chang-Hoon Lee, Jong-Yeol Lee
    Food Chemistry.2025; 473: 143019.     CrossRef
  • Harnessing Light Wavelengths to Enrich Health-Promoting Molecules in Tomato Fruits
    Bruno Hay Mele, Ermenegilda Vitale, Violeta Velikova, Tsonko Tsonev, Carolina Fontanarosa, Michele Spinelli, Angela Amoresano, Carmen Arena
    International Journal of Molecular Sciences.2025; 26(12): 5712.     CrossRef
  • Potentialities of Technosol-isolated PGPB consortium in promoting plant growth in lettuce seedlings
    Stefany Castaldi, Christian Lorenz, Ermenegilda Vitale, Lucia Santorufo, Rachele Isticato, Carmen Arena
    Plant and Soil.2025; 507(1-2): 475.     CrossRef
  • Ion-Exchanged Clinoptilolite as a Substrate for Space Farming
    Yuri Kalvachev, Ermenegilda Vitale, Carmen Arena, Totka Todorova, Daniel Ilkov, Violeta Velikova
    Agriculture.2024; 14(3): 350.     CrossRef
  • Cytogenetic and Biochemical Responses of Wheat Seeds to Proton Irradiation at the Bragg Peak
    Lacramioara Oprica, Gabriela Vochita, Marius-Nicușor Grigore, Sergey Shvidkiy, Alexander Molokanov, Daniela Gherghel, Anda Les, Dorina Creanga
    Plants.2023; 12(4): 842.     CrossRef
  • Characteristics and Research Status of Mutation Breeding Using Accelerator Beams
    Si-Yong Kang
    Korean Journal of Breeding Science.2023; 55(2): 110.     CrossRef
  • Iodine Enhances the Nutritional Value but Not the Tolerance of Lettuce to NaCl
    Giuseppe Maglione, Ermenegilda Vitale, Giulia Costanzo, Franca Polimeno, Carmen Arena, Luca Vitale
    Horticulturae.2022; 8(7): 662.     CrossRef
  • Ionizing Radiation: Effective Physical Agents for Economic Crop Seed Priming and the Underlying Physiological Mechanisms
    Jiaqi Wang, Yixin Zhang, Libin Zhou, Fu Yang, Jingpeng Li, Yan Du, Ruiyuan Liu, Wenjian Li, Lixia Yu
    International Journal of Molecular Sciences.2022; 23(23): 15212.     CrossRef
  • The Interplay between Light Quality and Biostimulant Application Affects the Antioxidant Capacity and Photosynthetic Traits of Soybean (Glycine max L. Merrill)
    Ermenegilda Vitale, Violeta Velikova, Tsonko Tsonev, Ida Ferrandino, Teresa Capriello, Carmen Arena
    Plants.2021; 10(5): 861.     CrossRef
  • Radio Sensitivity of Cowpea Plants after Gamma-Ray and Proton-Beam Irradiation
    Ryulyi Kang, Eunju Seo, Gyutae Kim, Aron Park, Woon Ji Kim, Si-Yong Kang, Bo-Keun Ha
    Plant Breeding and Biotechnology.2020; 8(3): 281.     CrossRef
  • Impact of Proton Beam Irradiation on the Growth and Biochemical Indexes of Barley (Hordeum vulgare L.) Seedlings Grown under Salt Stress
    Lacramioara Oprica, Marius-Nicusor Grigore, Iulia Caraciuc, Daniela Gherghel, Cosmin-Teodor Mihai, Gabriela Vochita
    Plants.2020; 9(9): 1234.     CrossRef
  • Growth Characteristics and Biological Responses of Korean Elite Soybean (Glycine maxL. Merr.) Cultivars Exposed to Gamma-Rays
    Juhyun Im, Jaihyunk Ryu, Woon Ji Kim, Sang Hun Kim, Si-Yong Kang, Bo-Keun Ha
    Plant Breeding and Biotechnology.2018; 6(2): 109.     CrossRef
  • Molecular characterization of proton beam-induced mutations in soybean using genotyping-by-sequencing
    Woon Ji Kim, Jaihyunk Ryu, Juhyun Im, Sang Hun Kim, Si-Yong Kang, Jeong-Hee Lee, Sung-Hwan Jo, Bo-Keun Ha
    Molecular Genetics and Genomics.2018; 293(5): 1169.     CrossRef
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Comparison of Phytochemicals and Antioxidant Activity in Blackberry (Rubus fruticosus L.) Fruits of Mutant Lines at the Different Harvest Time
Jaihyunk Ryu, Soon-Jae Kwon, Yeong Deuk Jo, Chang Hyun Jin, Bo Mi Nam, Seung Young Lee, Sang Wook Jeong, Seung Bin Im, Seung Cheol Oh, Lan Cho, Bo-Keun Ha, Si-Yong Kang
Plant Breed. Biotech. 2016;4(2):242-251.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.242

Blackberries (Rubus fruticosus L.) are a good source of antioxidants and contain appreciable levels of functional compounds. This study was carried out to evaluate fruit qualities (pH, soluble solids content, titratable acidity, and minerals), functional compounds (total phenolic content, total flavonoid content, anthocyanins, and ellagic acid), and antioxidant activity among five mutated blackberry lines over three ripening stages to examine the effect of fruit maturation on functional compounds and antioxidant activity. The content of sugars, total phenolic content, total flavonoid content, and anthocyanins (cyanidin-3-O-glucoside, cyanidin-3-O-xyloside, cyanidin-3-O-malonylglucoside, and cyanidin-3-O-dioxalylglucoside) increased as fruit development advanced, whereas the ellagic acid content decreased as the fruit became more mature. Among the minerals tested, potassium showed the highest concentrations at all stages of development. The antioxidant activity was correlated with total phenolic content (P≤0.01), total flavonoid content (P≤0.01), and total anthocyanins (P≤0.05). The results indicate that Maple and B201 lines contained the highest anthocyanin content and exhibited greater antioxidant activity.

Citations

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  • Differential analysis of free and bound phenolic compounds and its antioxidant activity of Ficus hirta Vahl. root cortex with different leaf morphotypes based on metabolomics
    Qing Gui, Qingmian Chen, Yufeng Zhang, Xiu Zeng, Shiyu Li, Jianxiong Huang, Xiuquan Wang
    Food Chemistry: X.2026; 34: 103554.     CrossRef
  • Ellagitannins in Rosoideae (Rosaceae): Occurrence, distribution, and agronomic insights
    Roberta Spangelyte, Pranas Viskelis, Lina Raudone, Paulina Streimikyte
    Journal of Agriculture and Food Research.2026; 29: 103008.     CrossRef
  • Purification and characterization of anthocyanin from Irish wild blackberry: impact on color, composition, and antioxidant capacity
    Sanyogita Sangram Bhosale, Daniel Granato, Nima Mohammadi
    Journal of Food Measurement and Characterization.2025; 19(4): 2730.     CrossRef
  • Evaluation of antimicrobial efficacy and shelf life of natural hop extract in cheese production
    Shynar Kyrykbaeva, Zhanar Kalibekkyzy, Zarina Kapshakbayeva, Saule Baytukenova, Zhanna Assirzhanova, Sholpan Baytukenova, Ayaulym Mustafayeva, Balzhan Ospanova, Asiya Utegenova
    CyTA - Journal of Food.2025;[Epub]     CrossRef
  • Phytochemical profiling, antioxidant potential, and UHPLC-HRMS analysis of Phlomis genus aerial parts for therapeutic applications
    Seyyed Ali Gheibi, Abolfazl Alirezalu, Habib Shirzad, Nunzia Iaccarino, Francesca Romano, Jussara Amato, Hadi Alipour
    Scientific Reports.2025;[Epub]     CrossRef
  • Evaluation of Anthocyanin Profiling, Total Phenolic and Flavonoid Content, and Antioxidant Activity of Korean Rubus Accessions for Functional Food Applications and Breeding
    Juyoung Kim, Jaihyunk Ryu, Seung Hyeon Lee, Jae Hoon Kim, Dong-Gun Kim, Tae Hyun Ha, Sang Hoon Kim
    Antioxidants.2025; 14(8): 1012.     CrossRef
  • Trends in maintaining postharvest freshness and quality of Rubus berries
    Hafiz Muhammad Shoaib Shah, Zora Singh, Jashanpreet Kaur, Mahmood Ul Hasan, Andrew Woodward, Eben Afrifa‐Yamoah
    Comprehensive Reviews in Food Science and Food Safety.2023; 22(6): 4600.     CrossRef
  • Blackberries and Mulberries: Berries with Significant Health-Promoting Properties
    Mariana S. Martins, Ana C. Gonçalves, Gilberto Alves, Luís R. Silva
    International Journal of Molecular Sciences.2023; 24(15): 12024.     CrossRef
  • Heating effect on nutritional value from two morphotypes (palmate and semi-palmate leaves) of Hibiscus sabdariffa
    Antoine Sambou, Nicolas Ayessou, Aly Diallo
    International Journal of Gastronomy and Food Science.2023; 32: 100698.     CrossRef
  • Characterization of Flavonoid, Free Amino Acid, Volatiles Components of ‘Minihyang’ Fruit, a New Cultivar Citrus reticulata
    Sang Suk Kim, YoSup Park, Seung-Gab Han
    Korean Journal of Breeding Science.2023; 55(3): 244.     CrossRef
  • Comparative Study on Phenolic Compounds and Antioxidant Activities of Hop (Humulus lupulus L.) Strobile Extracts
    Jae Il Lyu, Jaihyunk Ryu, Kyoung-Sun Seo, Kyung-Yun Kang, Sang Hoon Park, Tae Hyun Ha, Joon-Woo Ahn, Si-Yong Kang
    Plants.2022; 11(1): 135.     CrossRef
  • Identification of key phenolic compounds responsible for antioxidant activities of free and bound fractions of blackberry varieties' extracts by boosted regression trees
    Er Sheng Gong, Bin Li, Binxu Li, Natalia S Podio, Hongyu Chen, Tong Li, Xiyun Sun, Ningxuan Gao, Wenlong Wu, Tianran Yang, Guang Xin, Jinlong Tian, Xu Si, Changjiang Liu, Jiyue Zhang, Rui Hai Liu
    Journal of the Science of Food and Agriculture.2022; 102(3): 984.     CrossRef
  • The determination of antidiabetic, anticholinesterase and antioxidant properties of ethanol and water extracts of blackberry (Rubus fruticosus L.) fruits at different maturity stages
    Mehmet Akyüz
    South African Journal of Botany.2022; 151: 1035.     CrossRef
  • In vitro Antibacterial, Antioxidant and DNA Damage Protective Activity of Blackberry (Rubus fruticosus L.) Root Extracts
    Hatice Aysun MERCİMEK TAKCI, Sema GENÇ, Ayşenur YALÇIN, Eda ÖZDEMİR
    International Journal of Life Sciences and Biotechnology.2022; 5(2): 225.     CrossRef
  • Apple Fibers as Carriers of Blackberry Juice Polyphenols: Development of Natural Functional Food Additives
    Ivana Buljeta, Mario Nosić, Anita Pichler, Ivana Ivić, Josip Šimunović, Mirela Kopjar
    Molecules.2022; 27(9): 3029.     CrossRef
  • Characterization of Rubus fruticosus L. berries growing wild in Morocco: phytochemical screening, antioxidant activity and chromatography analysis
    Hafssa El Cadi, Hajar El Bouzidi, Ginane Selama, Btissam Ramdan, Yassine Oulad El Majdoub, Filippo Alibrando, Jamal Brigui, Ammar B. Altemimi, Paola Dugo, Luigi Mondello, Francesco Cacciola
    European Food Research and Technology.2021; 247(7): 1689.     CrossRef
  • Polyphenols and Antioxidant Activity of Citrus Fiber/Blackberry Juice Complexes
    Ivana Buljeta, Anita Pichler, Josip Šimunović, Mirela Kopjar
    Molecules.2021; 26(15): 4400.     CrossRef
  • Phenolic Compounds in Extracts of Hibiscus acetosella (Cranberry Hibiscus) and Their Antioxidant and Antibacterial Properties
    Jae Il Lyu, Jaihyunk Ryu, Chang Hyun Jin, Dong-Gun Kim, Jung Min Kim, Kyoung-Sun Seo, Jin-Baek Kim, Sang Hoon Kim, Joon-Woo Ahn, Si-Yong Kang, Soon-Jae Kwon
    Molecules.2020; 25(18): 4190.     CrossRef
  • Evaluation of the Biological Activities of Berries as an Inner Beauty Ingredient
    Ye-Rin Kim, Ae-Jung Kim
    Asian Journal of Beauty and Cosmetology.2020; 18(3): 375.     CrossRef
  • Investigation on High-Value Bioactive Compounds and Antioxidant Properties of Blackberries and Their Fractions Obtained by Home-Scale Juice Processing
    Cristina-Ramona Metzner Ungureanu, Andreea Ioana Lupitu, Cristian Moisa, Adrian Rivis, Lucian Octav Copolovici, Mariana-Atena Poiana
    Sustainability.2020; 12(14): 5681.     CrossRef
  • Phenolic Compound Content of Leaf Extracts from Different Roselle (Hibiscus sabdariffa) Accessions
    Jae Il Lyu, Jung Min Kim, Dong-Gun Kim, Jin-Baek Kim, Sang Hoon Kim, Joon-Woo Ahn, Si-Yong Kang, Jaihyunk Ryu, Soon-Jae Kwon
    Plant Breeding and Biotechnology.2020; 8(1): 1.     CrossRef
  • The effects of wheatgrass length on antioxidant activity and total phenolic content in wheatgrass (Triticum spp.)
    Yusuf ŞAVŞATLI
    TURKISH JOURNAL OF AGRICULTURE AND FORESTRY.2020; 44(3): 271.     CrossRef
  • Molecular characterization of proton beam-induced mutations in soybean using genotyping-by-sequencing
    Woon Ji Kim, Jaihyunk Ryu, Juhyun Im, Sang Hun Kim, Si-Yong Kang, Jeong-Hee Lee, Sung-Hwan Jo, Bo-Keun Ha
    Molecular Genetics and Genomics.2018; 293(5): 1169.     CrossRef
  • Genotyping-by-sequencing based single nucleotide polymorphisms enabled Kompetitive Allele Specific PCR marker development in mutant Rubus genotypes
    Jaihyunk Ryu, Woon Ji Kim, Juhyun Im, Sang Hun Kim, Kang-Seop Lee, Han-Jig Jo, Ee-Youb Kim, Si-Yong Kang, Jeong-Hee Lee, Bo-Keun Ha
    Electronic Journal of Biotechnology.2018; 35: 57.     CrossRef
  • Morphological characteristics, chemical and genetic diversity of kenaf (Hibiscus cannabinusL.) genotypes
    Jaihyunk Ryu, Soon-Jae Kwon, Dong-Gun Kim, Min-Kyu Lee, Jung Min Kim, Yeong Deuk Jo, Sang Hoon Kim, Sang Wook Jeong, Kyung-Yun Kang, Se Won Kim, Jin-Baek Kim, Si-Yong Kang
    Journal of Plant Biotechnology.2017; 44(4): 416.     CrossRef
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Effect of Proton Beam Irradiation on M1 Seeds and Seedling Growth in Rice
Joohyun Lee, A-Rim Lee, Soon-Wook Kwon
Plant Breed. Biotech. 2015;3(4):384-388.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.384

This study was carried out to evaluate effect of proton beam irradiation on M1 seed germination and seedling growth. For dosage effect, mature and healthy Supersami2 seeds were irradiated with 0, 204, 395, 502, and 700Gy. The traits for germination were not affected by dosage effect of proton beam irradiation. Germination rate evaluated at 7 days after imbibition ranged from 93.3% to 98.7%; germination vigor ranged from 59.3% to 68.7% where in the dose of 700Gy showed the lowest value of 59.3%. The average days of germination ranged from 1.36 to 1.48. The seedling growth was affected by the dosage. Withered rate (withered plants after germination) was increased as the dose increased. The withered rate of 53.9% was detected in 395Gy and no plant survived in 700Gy. In the ~400Gy treatment, the sensitivity of the traits of germination among Dianxi4, Jeogjinju, MS11(Maligaya Special 11), and Superjami2 was not different while the withered rate was different: 9.7% in MS11, 32.1% in Dianxi4, 53.9% in Superjami2, and 59.7% in Jeogjinju. Based on the germination rate and withered rate, it can be suggested that 350Gy to 450Gy is a starting point for applying proton beam irradiation to rice seed for mutation breeding.

Citations

Citations to this article as recorded by  
  • Characteristics and Research Status of Mutation Breeding Using Accelerator Beams
    Si-Yong Kang
    Korean Journal of Breeding Science.2023; 55(2): 110.     CrossRef
  • The effect of gamma radiation on the growth of black rice plants generation m1
    S Nurhidayah, E Firmansyah, S Rahayu
    IOP Conference Series: Earth and Environmental Science.2021; 672(1): 012011.     CrossRef
  • Mutation resource of Samba Mahsuri revealed the presence of high extent of variations among key traits for rice improvement
    Gopi Potupureddi, Vishalakshi Balija, Suneel Ballichatla, Gokulan C. G., Komal Awalellu, Swathi Lekkala, Karteek Jallipalli, Gayathri M. G., Ershad Mohammad, Milton M, Srikanth Arutla, Rajender Burka, Laha Gouri Shankar, Padmakumari Ayyangari Phani, Subba
    PLOS ONE.2021; 16(10): e0258816.     CrossRef
  • Impact of Proton Beam Irradiation on the Growth and Biochemical Indexes of Barley (Hordeum vulgare L.) Seedlings Grown under Salt Stress
    Lacramioara Oprica, Marius-Nicusor Grigore, Iulia Caraciuc, Daniela Gherghel, Cosmin-Teodor Mihai, Gabriela Vochita
    Plants.2020; 9(9): 1234.     CrossRef
  • Effects of proton beam irradiation on seed germination and growth of soybean (Glycine max L. Merr.)
    Juhyun Im, Woon Ji Kim, Sang Hun Kim, Bo-Keun Ha
    Journal of the Korean Physical Society.2017; 71(11): 752.     CrossRef
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Genetic Diversity and Relationship Assessment based on AFLP Analysis in Blackberry (Rubus fructicosus L.) Mutant Lines
Jaihyunk Ryu, Bo-Keun Ha, Dong sub Kim, Jin-Baek Kim, Sang Hoon Kim, Joon-Woo Ahn, Il Yun Jeong, Han-Jik Jo, Ee-Yup Kim, Si-Yong Kang
Plant Breed. Biotech. 2014;2(4):386-395.   Published online December 31, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.4.386

This study was carried out to evaluate the genetic diversity and relationships among fifty-six blackberry (Rubus fructicosus) mutants derived from gamma-ray treatment (fifty-two lines) by analysis of Amplified fragment length polymorphism (AFLP) markers. Both cluster analysis and principal coordinate analysis (PCOORDA) were conducted in order to study the genetic diversity, using both morphological traits and AFLP makers. A total of 589 bands were amplified with an average of 58.9 bands per primer. Among them, 560 were identified to be polymorphic, with a rate of 95.08%. A showed a highly significant (P≤0.01) positive correlation with GD and PIC (r2=0.999). MI also showed a significant (P≤0.05) positive correlation with GD and PIC. According to the clustering analysis, all mutant lines could be classified into five categories, but the three gamma-ray treatment lines and the cross-bred line were not clustered into any groups. For the morphological traits, cluster analysis divided the blackberry germplasm into six clusters and two independent groups. In addition, the morphological dendrogram indicated an unclear pattern of division among the groups based on AFLP analysis. The findings of this study indicate that mutant lines have high genetic diversity, and can be effectively utilized as materials for the improvement of breeding.

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Microarray Analysis of bacterial blight resistance 1 mutant rice infected with Xanthomonas oryzae pv. oryzae
So Young Yi, Ha Yeon Lee, Hyun A Kim, Chan Ju Lim, Woong Bom Kim, Hyun A Jang, Jong-Seong Jeon, Suk-Yoon Kwon
Plant Breed. Biotech. 2013;1(4):354-365.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.354

We analyzed the transcriptional profile of the Xoo infected bbr1 mutant using a commercial rice gene chip containing 51,279 transcripts. Microarray revealed 92 genes with increased levels of expression and 22 genes with decreased levels of expression in bbr1. Some of the differentially expressed genes were validated by qRT-PCR. Higher expression of defense-related genes and AP2 domain containing transcription factors along with lower expression of reactive oxygen scavenging enzymes may be responsible for defense signaling in the bbr1 upon Xoo infection. The putative target genes of AP2 domain containing transcription factors also showed differential gene expression during Xoo infection, some of which encoded bacterial pathogen resistance-related protein. Induction of AP2 domain containing transcription factors along with up-regulation of their putative target genes during Xoo infection may inhibit pathogen spread in the bbr1. This observation supports the hypothesis that AP2 domain containing transcription factors is involved in the regulation of differentially expressed genes in bbr1.

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Phenotypic Characterization and Genetic Mapping of An Open-hull Sterile Mutant in Rice
Yoye Yu, Rihua Piao, Wenzhu Jiang, Sunghan Kim, Hee-Jong Koh
Plant Breed. Biotech. 2013;1(1):24-32.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.024

Rice hulls remain closed throughout the ripening period to maintain internal humidity of the grains. An Open-hull sterile mutant was induced by N-methyl-N-nitrosourea (MNU) treatment on Sinsunchalbyeo rice, a japonica type. This mutant showed open hulls even in the ripening stages and fully mature grains. In addition, several altered characteristics were observed, including of narrowed palea, decreased grain size, partial pollen sterility and erect panicle. Microscopic analysis showed that the palea was positioned slightly inside the lemma, and the size of palea decreased in the mutant. Genetic analysis of F2 and F3 segregation populations derived from the cross between the Open-hull sterile mutant (Oryza sativa ssp. japonica) and Milyang23 (O. sativa ssp. indica) indicated that the Open-hull trait was controlled by a single recessive allele. The fine-mapping with STS (sequence tagged site) markers revealed that the mutant gene was located on the short arm of chromosome 3. We were able to narrow it down until 30.6Kb where three candidate genes were found.

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  • Fine Mapping and Candidate-Gene Analysis of an open glume multi-pistil 3 (mp3) in Rice (Oryza sativa L.)
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    Agriculture.2022; 12(10): 1731.     CrossRef
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