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Enhancement of Inpari 42 Rice Variety through Marker-Assisted Backcrossing for Aromatic Trait Integration and Agronomic Improvement in BC1F1 Generation
Muhammad Nuril Fitriyandi, Ummi Sholikhah, Tri Ratnasari, Ahmad Ilham Tanzil, Tri Handoyo, Bambang Sugiharto, Sholeh Avivi, Wahyu Indra Duwi Fanata
Plant Breed. Biotech. 2025;13:281-294.
Published online December 18, 2025
DOI: https://doi.org/10.9787/PBB.2025.13.281

This study aimed to enhance the Inpari 42 rice variety by integrating the aromatic trait through Marker-Assisted Backcrossing (MAB) while improving key agronomic characteristics in the BC1F1 generation. The aromatic gene from Merah Wangi was successfully introgressed into BC1F1 plants, confirmed through molecular analysis using the Bradbury marker, which detects mutations in the BADH2 gene responsible for fragrance in rice. Thirty BC1F1 plants with a heterozygous mutation in BADH2 were identified, demonstrating the reliability of MAB in maintaining the aromatic trait across generations. Agronomic evaluations revealed that BC1F1 plants exhibited intermediate flowering time, increased plant height, and longer panicles compared to the parental lines. Additionally, BC1F1 plants showed enhanced tillering capacity, more productive tillers, and higher grain yield per plant, indicating the successful integration of desirable traits from both parents. The next step in this research is to conduct further backcrosses with Inpari 42 to develop a stable aromatic variety, combining the high-yielding characteristics of Inpari 42 with the aromatic traits of Merah Wangi. These findings highlight the potential of BC1F1 lines for developing high-yielding aromatic rice varieties suitable for diverse agricultural settings.

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Research Articles
Genetic Purity Analysis Using Polymorphic SSR Markers in Rice Genotypes (Oryza sativa L.) and Their Confirmation for the Parental Lines
Afifuddin Latif Adiredjo, Noer Rahmi Ardiarini, Damanhuri
Plant Breed. Biotech. 2023;11(3):220-224.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.220

The purity of seeds can be identified from the traits inherited from their parental lines. Hence, contamination may occur at the crossing step due to unshared similarities with their parents. This research aims to measure the genetic purity of several genotypes obtained from crosses between upland and lowland rice through the banding pattern differences among the genotype samples by using Simple Sequence Repeats (SSR) markers. Taking the leaf samples was carried out at the experimental field, while the marker analysis was conducted in the Plant Biotechnology Laboratory. In this research, 8 (eight) genotypes obtained from crossing, comprising F1, F2, and BC1 along with 4 (four) of their parents from upland rice and lowland rice, were tested using 6 (six) drought-specific SSR primers of RM5, RM211, RM232, RM249, RM255, and RM258. The banding pattern of the electrophoresis results on the 12 rice genotypes showed clear, unsmeared quality. Based on the results of distance and genetic similarities, the 12 genotypes could be classified into 4 (four) clusters in the dendrogram. Cluster I consists of the Situ Bagendit and BC1 TWCH varieties, Cluster II the Towuti variety, Cluster III the Ciherang, Cibogo, F1 SBCH, F1 SBCB, and F1 TWCH varieties, and Cluster IV the F2 SBCH, F2 TWCH, F2 SBCB, and BC1 SBCH varieties.

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  • Introgressing photoperiod/thermo-sensitive genic male sterile gene into Basmati 370 rice
    Beatrice Nyarangi Nyankemba, Edith Esther Arunga, Paul Njiruh Nthakanio
    Journal of Experimental Biology and Agricultural Sciences.2024; 12(5): 756.     CrossRef
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Genetic Elimination of Off-Flavour Generating Lipoxygenase-2 Gene of Soybean through Marker Assisted Backcrossing and Its Effect on Seed Longevity
Reena Rawal, Vineet Kumar, Anita Rani, Sadashiv Madhav Gokhale
Plant Breed. Biotech. 2020;8(2):163-173.   Published online June 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.2.163

Lipoxygenase-2 present in soybean seeds is the prime contributor to off-flavour generated during the processing of soy products. Genetic elimination of this undesirable component is important as the heat inactivation not only incurs extra cost but also affects the protein solubility. The present study was aimed at eliminating lipoxygenase-2 from cultivar ‘JS97-52’ through marker assisted introgression of null allele of Lox2 from PI596540 (lox2lox2). Foreground selection in BC1F1, BC2F1 and BC3F1 of the cross ‘JS97-52’ × PI596540 was carried out using lox2 specific marker, while lox2 specific marker in combination with SSR marker Satt656 tightly linked with Lox2 locus was employed for identification of homozygous recessive plants (lox2lox2) in BC2F2 and BC3F2. Background selection performed using 150 polymorphic markers resulted in development of 12 Lox2-free soybean lines (BC3F2:3 seeds) exhibiting recurrent parent genome content in the range of 97.66-98.66%. Qualitative and quantitative assays confirmed the absence of Lox2 in introgressed lines (ILs). The ILs were at par in days-to-flowering, days-to-maturity,100-seeds weight, yield and protein content with the recurrent parent but showed significant improvement in seed longevity over the latter.

Citations

Citations to this article as recorded by  
  • Lipoxygenases (LOXs): Will turning off this genetic switch help safeguard the flavor and nutritional quality of stored lipid-rich staple foods?
    Parameshwaran Mathavaraj, Vignesh Muthusamy, Ashvinkumar Katral, Puja Mandal, Rajkumar Uttamrao Zunjare, Firoz Hossain
    Food Chemistry.2025; 470: 142637.     CrossRef
  • Rapid Development of Lipoxygenase‐2 Free Vegetable Soybean Genotypes (Glycine max (L.) Merill) Through Molecular Breeding Under Controlled Environment
    Meniari Taku, Manisha Saini, Rahul Kumar, Nenavath Krishna Kumar Rathod, Onteddu Reshma, Manu Yadav, Sapna Langyan, Ambika Rajendran, S. K. Lal, Akshay Talukdar
    Plant Breeding.2025; 144(4): 470.     CrossRef
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    Mughair Abdul Aziz, Khaled Masmoudi
    Horticultural Plant Journal.2025; 11(1): 15.     CrossRef
  • Nutritional improvement in soybean (Glycine max (L.) Merrill) through plant breeding and biotechnological interventions
    Vedna Kumari, Ronika Thakur, Jyoti Kumari, Aradhana Kumari, Diksha Khajuria, Marta Santalla
    Crop & Pasture Science.2024;[Epub]     CrossRef
  • Genetic Diversity, Conservation, and Utilization of Plant Genetic Resources
    Romesh Kumar Salgotra, Bhagirath Singh Chauhan
    Genes.2023; 14(1): 174.     CrossRef
  • Genetic Augmentation of Legume Crops Using Genomic Resources and Genotyping Platforms for Nutritional Food Security
    Romesh K. Salgotra, Charles Neal Stewart
    Plants.2022; 11(14): 1866.     CrossRef
  • Genetic elimination of lipoxygenase‐2 improves sprouting and tocopherols, and removal of Kunitz trypsin inhibitor enhances in vitro protein digestibility in soybean (Glycine max)
    Vineet Kumar, Anita Rani, Trupti Tayalkar, Priyamvada Jha, Priyanka Mittal, Aseem Kumar Anshu, Reena Rawal
    Plant Breeding.2022; 141(1): 63.     CrossRef
  • Marker-assisted stacking of null Kunitz trypsin inhibitor and off-flavour generating lipoxygenase-2 in soybean
    V. Kumar, A. Rani, A. K. Anshu, T. Tayalkar
    The Journal of Agricultural Science.2021; 159(3-4): 272.     CrossRef
  • Genomic resources in plant breeding for sustainable agriculture
    Mahendar Thudi, Ramesh Palakurthi, James C. Schnable, Annapurna Chitikineni, Susanne Dreisigacker, Emma Mace, Rakesh K. Srivastava, C. Tara Satyavathi, Damaris Odeny, Vijay K. Tiwari, Hon-Ming Lam, Yan Bin Hong, Vikas K. Singh, Guowei Li, Yunbi Xu, Xiaopi
    Journal of Plant Physiology.2021; 257: 153351.     CrossRef
  • First Indian Soybean Variety Free from Off-Flavour Generating Lipoxygenase-2 Gene Identified for Release for Commercial Cultivation
    Vineet Kumar, Anita Rani, Reena Rawal
    National Academy Science Letters.2021; 44(6): 477.     CrossRef
  • Use of Soy-Based Formulas and Cow's Milk Allergy: Lights and Shadows
    Elvira Verduci, Elisabetta Di Profio, Lucia Cerrato, Giulia Nuzzi, Luca Riva, Giulia Vizzari, Enza D'Auria, Maria Lorella Giannì, Gianvincenzo Zuccotti, Diego G. Peroni
    Frontiers in Pediatrics.2020;[Epub]     CrossRef
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Development of Improved Ciherang-Sub1 Having Tolerance to Anaerobic Germination Conditions
Anna Mariel U. Toledo, John Carlos I. Ignacio, Carlos Casal, Zennia Jean Gonzaga, Merlyn S. Mendioro, Endang M. Septiningsih
Plant Breed. Biotech. 2015;3(2):77-87.   Published online June 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.2.077

The increased severity and frequency of flooding is causing greater yield reductions in most rice-growing areas. To address this, popular cultivars were improved through introgression of SUB1, an FR13A-derived QTL conferring submergence tolerance at the vegetative stage, using marker-assisted backcrossing (MABC). Ciherang-Sub1, one of these improved near isogenic lines (NILs), showed significantly higher tolerance compared to the original cultivar while retaining its desirable agronomic qualities. However, due to the current shift to direct seeding, seed germination may also be adversely affected by flooding; thus the addition of major QTLs which can confer anaerobic germination (AG) tolerance will be highly beneficial. The AG tolerance QTL, qAG-9-2, also referred to as AG1, derived from Khao Hlan On, a Myanmar landrace, has been introgressed into the elite cultivar IR64 to produce IR64-AG1. This research focused on the transfer of AG1 to Ciherang-Sub1 via MABC, using IR64-AG1, a closely-related donor. Introgression of AG1 and recovery of the Ciherang genome was done in two backcross generations followed by one generation of selfing. The use of a closely-related donor shortened the development period to two years which could have been further reduced if a larger BC1F1 population had been used. Phenotypic evaluation showed that introgression of AG1 significantly increased AG tolerance compared to Ciherang-Sub1, and that the newly developed Ciherang-Sub1+AG1 retained the submergence tolerance from SUB1. The approach is very promising for faster development of improved lines using closely-related cultivars or improved lines as donors for introducing key traits.

Citations

Citations to this article as recorded by  
  • Removal of Transgenes and Evaluation of Yield Penalties in Genome Edited Bacterial Blight Resistant Rice Varieties
    Eliza P. I. Loo, José C. Huguet‐Tapia, Michael Selvaraj, Melissa Stiebner, Britta Killing, Marcel Buchholzer, Van Schepler‐Luu, Thomas Hartwig, Sandra P. Valdéz Gutierrez, Madlen I. Rast‐Somssich, Christian Paolo Balahadia, Inez H. Slamet‐Loedin, Ricardo
    Plant Biotechnology Journal.2026; 24(2): 939.     CrossRef
  • Advances in Rice Coleoptile Elongation: Implications for Direct-Seeded Rice Adaptation
    Honghuan FAN, Jian SONG, Liqun TANG, Junmin WANG, Zhonghua SHENG, Guiai JIAO, Shaoqing TANG, Shikai HU, Peisong HU
    Rice Science.2026; 33(3): 327.     CrossRef
  • Towards dual-stage flood resilience: merging anaerobic germination and submergence tolerance in rice
    Sagar Lamsal, Haru Hirano, Takeshi Fukao, Motoyuki Ashikari
    Journal of Experimental Botany.2026;[Epub]     CrossRef
  • Natural Variation in OsTPP7 Affects the Root Traits in Combined Germination Under Submergence and Nutrient Deficiency in indica Rice
    Sabarinathan Selvaraj, Subhashree Nayak, Parameswaran Chidambaranathan, Priyadarsini Sanghamitra, Simanta Mohanty, Cayalvizhi Balasubramaniasai, Sanghamitra Samantaray
    Tropical Plant Biology.2026;[Epub]     CrossRef
  • Genetic improvement from 50 years of rice breeding in Indonesia
    Trias Sitaresmi, Aris Hairmansis, Willy Bayuardi Suwarno, Aan Andang Daradjat, Yudhistira Nugraha
    Journal of Crop Improvement.2025; 39(6): 517.     CrossRef
  • Genomic approaches and prospects for breeding flood-tolerant rice in Africa
    Victoria Bulegeya, Newton Kilasi, Waseem Hussain, Rosemary Murori, Atugonza Bilaro, Abdelbagi Ismail, Susan Nchimbi-Msolla
    Journal of Plant Interactions.2025;[Epub]     CrossRef
  • Understanding anaerobic germination in direct-seeded rice: a genomic mapping approach
    Vikas Kumar Verma, Nitika Sandhu
    BMC Plant Biology.2024;[Epub]     CrossRef
  • Selection of Rice Promising Lines Having Ciherang’s Idiotype for Improved Resistance of Main Pest and Diseases
    T Sitaresmi, H Safitri, Nafisah, U Susanto, A Hairmansis, C Gunarsih, Rahmini, C Roza, Y Nugraha
    IOP Conference Series: Earth and Environmental Science.2023; 1172(1): 012022.     CrossRef
  • Sub1 and qDTY3.1 improved tolerance of rice (Oryza sativa L.) lines to drought and submergence stresses
    Asmuni Mohd Ikmal, Abd Aziz Shamsudin Noraziyah, Ratnam Wickneswari, Yusuf Opeyemi Oyebamiji
    Euphytica.2023;[Epub]     CrossRef
  • Genomic landscape of the OsTPP7 gene in its haplotype diversity and association with anaerobic germination tolerance in rice
    Kyaw Myo Aung, Win Htet Oo, Thant Zin Maung, Myeong-Hyeon Min, Aueangporn Somsri, Jungrye Nam, Kyu-Won Kim, Bhagwat Nawade, Chang-Yong Lee, Sang-Ho Chu, Yong-Jin Park
    Frontiers in Plant Science.2023;[Epub]     CrossRef
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    Kai Liu, Jing Yang, Kai Sun, Dongxiu Li, Lixin Luo, Taotao Zheng, Hui Wang, Zhiqiang Chen, Tao Guo
    Molecular Breeding.2023;[Epub]     CrossRef
  • Flooding tolerance in Rice: adaptive mechanism and marker-assisted selection breeding approaches
    Md Azadul Haque, Mohd Y. Rafii, Martini Mohammad Yusoff, Nusaibah Syd Ali, Oladosu Yusuff, Fatai Arolu, Mohammad Anisuzzaman
    Molecular Biology Reports.2023; 50(3): 2795.     CrossRef
  • Segregation of molecular markers associated with Bph3 gene in BC5F2 population derived from Ciherang rice variety as the recipient parent
    M Yunus, A Dadang, Slamet, A Warsun, D Satyawan, Chaerani
    IOP Conference Series: Earth and Environmental Science.2023; 1255(1): 012044.     CrossRef
  • Genome-wide identification, expression pattern and genetic variation analysis of SWEET gene family in barley reveal the artificial selection of HvSWEET1a during domestication and improvement
    Wenhao Yue, Kangfeng Cai, Xue Xia, Lei Liu, Junmei Wang
    Frontiers in Plant Science.2023;[Epub]     CrossRef
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    Plant Genetic Resources: Characterization and Utilization.2022; 20(4): 270.     CrossRef
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    Rice.2022;[Epub]     CrossRef
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    Plants.2021; 10(4): 705.     CrossRef
  • Improved Transformation and Regeneration of Indica Rice: Disruption of SUB1A as a Test Case via CRISPR-Cas9
    Yuya Liang, Sudip Biswas, Backki Kim, Julia Bailey-Serres, Endang M. Septiningsih
    International Journal of Molecular Sciences.2021; 22(13): 6989.     CrossRef
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    Hedia Tnani, Dmytro Chebotarov, Ranjita Thapa, John Carlos I. Ignacio, Walter K. Israel, Fergie A. Quilloy, Shalabh Dixit, Endang M. Septiningsih, Tobias Kretzschmar
    International Journal of Molecular Sciences.2021; 22(9): 4445.     CrossRef
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    Journal of Biosciences.2021;[Epub]     CrossRef
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    Maxwell Darko Asante, Samuel Oluwasegun Ipinyomi, Ayodeji Abe, Kossi Lorimpo Adjah, Phyllis Aculey, Raphael Kwame Bam, Baboucarr Manneh
    Journal of Crop Improvement.2021; 35(6): 832.     CrossRef
  • Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1
    Yuya Liang, Shichen Wang, Chersty L. Harper, Nithya K. Subramanian, Rodante E. Tabien, Charles D. Johnson, Julia Bailey-Serres, Endang M. Septiningsih
    Plants.2021; 10(12): 2740.     CrossRef
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    Lina Castano-Duque, Sharmistha Ghosal, Fergie A Quilloy, Thomas Mitchell-Olds, Shalabh Dixit
    Plant Physiology.2021; 186(2): 1042.     CrossRef
  • Growth, productivity and grain quality of AG1 and AG2 QTLs introgression lines under flooding in direct-seeded rice system
    Satyen Mondal, M. Iqbal R. Khan, Shalabh Dixit, Pompe C. Sta. Cruz, Endang M. Septiningsih, Abdelbagi M. Ismail
    Field Crops Research.2020; 248: 107713.     CrossRef
  • Molecular mechanisms and future improvement of submergence tolerance in rice
    Takeshi Kuroha, Motoyuki Ashikari
    Molecular Breeding.2020;[Epub]     CrossRef
  • Responses of AG1 and AG2 QTL introgression lines and seed pre-treatment on growth and physiological processes during anaerobic germination of rice under flooding
    Satyen Mondal, M. Iqbal R. Khan, Frederickson Entila, Shalabh Dixit, Pompe C. Sta. Cruz, M. Panna Ali, Barry Pittendrigh, Endang M. Septiningsih, Abdelbagi M. Ismail
    Scientific Reports.2020;[Epub]     CrossRef
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    Yusuff Oladosu, Mohd Y. Rafii, Fatai Arolu, Samuel Chibuike Chukwu, Ismaila Muhammad, Isiaka Kareem, Monsuru Adekunle Salisu, Ibrahim Wasiu Arolu
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    Agriculture.2020; 10(10): 453.     CrossRef
  • The Molecular Regulatory Pathways and Metabolic Adaptation in the Seed Germination and Early Seedling Growth of Rice in Response to Low O2 Stress
    Mingqing Ma, Weijian Cen, Rongbai Li, Shaokui Wang, Jijing Luo
    Plants.2020; 9(10): 1363.     CrossRef
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    Robyn Anderson, Philipp E Bayer, David Edwards
    Current Opinion in Plant Biology.2020; 56: 197.     CrossRef
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    Rejbana Alam, Maureen Hummel, Elaine Yeung, Anna M. Locke, John Carlos I. Ignacio, Miriam D. Baltazar, Zhenyu Jia, Abdelbagi M. Ismail, Endang M. Septiningsih, Julia Bailey‐Serres
    Plant Direct.2020;[Epub]     CrossRef
  • Pyramiding QTLs controlling tolerance against drought, salinity, and submergence in rice through marker assisted breeding
    Valarmathi Muthu, Ragavendran Abbai, Jagadeeshselvam Nallathambi, Hifzur Rahman, Sasikala Ramasamy, Rohit Kambale, Thiyagarajan Thulasinathan, Bharathi Ayyenar, Raveendran Muthurajan, Paul C. Struik
    PLOS ONE.2020; 15(1): e0227421.     CrossRef
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    Hasil Sembiring, Nuning A. Subekti, Erythrina, Dedi Nugraha, Bhakti Priatmojo, Alexander M. Stuart
    Agriculture.2019; 10(1): 1.     CrossRef
  • Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq
    Jing Yang, Kai Sun, Dongxiu Li, Lixin Luo, Yongzhu Liu, Ming Huang, Guili Yang, Hong Liu, Hui Wang, Zhiqiang Chen, Tao Guo
    BMC Genomics.2019;[Epub]     CrossRef
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    Nitika Sandhu, Shalabh Dixit, B. P. M. Swamy, Anitha Raman, Santosh Kumar, S. P. Singh, R. B. Yadaw, O. N. Singh, J. N. Reddy, A. Anandan, Shailesh Yadav, Challa Venkataeshwarllu, Amelia Henry, Satish Verulkar, N. P. Mandal, T. Ram, Jyothi Badri, Prashant
    Rice.2019;[Epub]     CrossRef
  • Genetic Analysis and QTL Mapping for Agronomic and Yield-Related Traits in Ciherang-Sub1 Rice Backcross Populations
    Estria F Pramudyawardani, Hajrial Aswidinnoor, Bambang S Purwoko, Willy B Suwarno, M R Islam, Holden Verdeprado, Bertrand CY Collard
    Plant Breeding and Biotechnology.2018; 6(3): 177.     CrossRef
  • Optimizing Sowing and Flooding Depth for Anaerobic Germination-Tolerant Genotypes to Enhance Crop Establishment, Early Growth, and Weed Management in Dry-Seeded Rice (Oryza sativa L.)
    Buddhika Sampath Chamara, Buddhi Marambe, Virender Kumar, Abdelbagi M. Ismail, Endang M. Septiningsih, Bhagirath Singh Chauhan
    Frontiers in Plant Science.2018;[Epub]     CrossRef
  • Agronomic manipulations can enhance the productivity of anaerobic tolerant rice sown in flooded soils in rainfed areas
    B. Lal, Priyanka Gautam, A.K. Nayak, R. Raja, M. Shahid, R. Tripathi, Sudhanshu Singh, Endang M. Septiningsih, Abdelbagi M. Ismail
    Field Crops Research.2018; 220: 105.     CrossRef
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    David J. Mackill, Gurdev S. Khush
    Rice.2018;[Epub]     CrossRef
  • Combining drought and submergence tolerance in rice: marker-assisted breeding and QTL combination effects
    Shalabh Dixit, Anshuman Singh, Nitika Sandhu, Aditi Bhandari, Prashant Vikram, Arvind Kumar
    Molecular Breeding.2017;[Epub]     CrossRef
  • Genetics, Physiological Mechanisms and Breeding of Flood-Tolerant Rice (Oryza sativaL.)
    Anuradha Singh, Endang M. Septiningsih, Harendra S. Balyan, Nagendra K. Singh, Vandna Rai
    Plant and Cell Physiology.2017; : pcw206.     CrossRef
  • Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions
    Anshuman Singh, Jerome Carandang, Zennia Jean C. Gonzaga, Bertrand C. Y. Collard, Abdelbagi M. Ismail, Endang M. Septiningsih
    Rice.2017;[Epub]     CrossRef
  • Mapping additional QTLs from FR13A to increase submergence tolerance in rice beyond SUB1
    Zennia Jean C. Gonzaga, Jerome Carandang, Darlene L. Sanchez, David J. Mackill, Endang M. Septiningsih
    Euphytica.2016; 209(3): 627.     CrossRef
  • A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice
    Tobias Kretzschmar, Margaret Anne F. Pelayo, Kurniawan R. Trijatmiko, Lourd Franz M. Gabunada, Rejbana Alam, Rosario Jimenez, Merlyn S. Mendioro, Inez H. Slamet-Loedin, Nese Sreenivasulu, Julia Bailey-Serres, Abdelbagi M. Ismail, David J. Mackill, Endang
    Nature Plants.2015;[Epub]     CrossRef
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Evaluation of Gene Flow from GM to Non-GM Rice
Hyun-Kyung Bae, Moe Moe Oo, Ji Eun Jeon, Dung Nguyen Tien, Sung Aeong Oh, Sung-Dug Oh, Soon-Jong Kweon, Moo-Young Eun, Soon Ki Park
Plant Breed. Biotech. 2013;1(2):162-170.   Published online June 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.2.162

Gene flow events from genetically modified (GM) rice to adjacent non-GM rice lines naturally happen in the field. GM rice lines containing desirable agronomic traits such as tolerance to abiotic stresses and resistance to biotic stresses can be used to cross with non-GM cultivated rice and also to wild species of rice. This event can eventually lead to offspring which possess traits that allows a better chance of survival in the field. However this phenomenon has the possibility to produce undesirable effect in the environment surrounding the rice field. The
objective
of this study was to determine the out-crossing rate of GM rice to cultivated rice. Transgenic rice, Hwangkembyeo (containing beta-carotene enhancing gene and bar gene) and cultivated rice, Nakdongbyeo (mother plant of Hwangkembyeo) were used in this study. Results showed that most gene flow events occurred within 1 m range. In particular, gene flow events mostly happened within 30 cm, while it was rarely observed beyond 90 cm range. The maximum distance for gene flow event was observed at 6 m range however the sharp cut point distance was observed at 60–90 cm range. The prevailing gene flow direction was Northwest (NW) which coincided with the prevailing wind of Southeastern (SE) direction. Wind direction and distance were found to be the most important factors for determining rice out-crossing rate. But for more accurate prevention of GM gene flow, many factors should be considered like the local weather condition, wind direction, wind speed and flowering time.

Citations

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  • Rice ( Oryza sativa L.) is predominantly cross-pollinated
    Debal Deb
    Botany Letters.2026; 173(2): 156.     CrossRef
  • Assessment of potential gene flow from resveratrol-enriched genetically modified rice to non-genetically modified rice and weedy rice
    Sang Dae Yun, Sung Dug Oh, Yang Qin, Myung-Ho Lim, Hye Lin Kim, Je Yeon Choi, Eun Young Kim, Sung Aeong Oh, Seong-Kon Lee, Doh-Won Yun, Tae-Hun Ryu, Jae Kwang Kim, Soon Ki Park
    Journal of Plant Biotechnology.2025;[Epub]     CrossRef
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    Ning Hu, Dantong Wang, Qianhua Yuan, Yang Liu, Huizi Jiang, Xinwu Pei
    Plants.2025; 14(13): 1980.     CrossRef
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    Sung-Dug Oh, Ancheol Chang, Boeun Kim, Soo-In Sohn, Doh-Won Yun
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  • 4 Crossref