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"ALOG"

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"ALOG"

Research Article

Identification, Biochemical and Elemental Profiling of Two Green Microalgae Isolated from Moroccan Impoundment (Chlorella vulgaris and Scenedesmus incrassatulus): Insights Into Nitrogen and Phosphorus Stress Responses and
Reda Fassi Fihri, Sofie Van Nerom, Latifa Mbarkiou, Mohammad Sibtain Kadri, Boubker Oujaa, Saad Rachiq, Rachid Lahlali, Lahsen El Ghadraoui, El-Ouazna Bouchamma
Plant Breed. Biotech. 2026;14:101-125.
Published online May 4, 2026
DOI: https://doi.org/10.9787/PBB.2026.14.101

Microalgae offer a sustainable platform for biotechnology due to their rapid growth and ability to accumulate high-value metabolites such as lipids, proteins, and carbohydrates. This study investigates the biochemical and morphological responses of Chlorella vulgaris and Scenedesmus incrassatulus across different growth phases and under nitrogen (N) and phosphorus (P) deficiency. Molecular identification and phylogenetic analysis confirmed the taxonomic status of both species. Scanning Electron Microscopy (SEM) combined with Energy Dispersive X-ray Spectroscopy (EDS) revealed species-specific surface structures and elemental composition. S. incrassatulus exhibited a compact, granular morphology, while C. vulgaris showed a smoother, colonial structure. EDS analysis demonstrated higher potassium and phosphorus levels in C. vulgaris, whereas S. incrassatulus presented elevated calcium and magnesium contents. Biochemical profiling indicated a metabolic shift during the stationary phase, with reduced protein synthesis and increased lipid and carbohydrate accumulation. Under nitrogen deficiency, C. vulgaris achieved the highest lipid content (53.68%), while S. incrassatulus reached 45.86%. Carbohydrate accumulation was also prominent during the stationary phase, with values of 49.18% for C. vulgaris and 47.99% for S. incrassatulus. Protein content was highest in the exponential phase and declined under nutrient stress. Elemental analysis via Inductively Coupled Plasma-Atomic Emission Spectroscopy (ICP-AES) confirmed species-specific macronutrient and trace element profiles, supporting EDS data. These findings highlight the adaptive biochemical and structural traits of the two microalgae species, reinforcing their potential in biofuel production, sustainable agriculture, bioremediation, and environmental applications. Future work should focus on optimizing cultivation conditions and exploring genetic approaches to maximize metabolite yields for industrial-scale applications.

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Review

Genetic Resources and Varietal Environment of Grown Fonio Millets in West Africa: Challenges and Perspectives
Cyrille Kanlindogbe, Emmanuel Sekloka, Emmanuel Hala Kwon-Ndung
Plant Breed. Biotech. 2020;8(2):77-88.   Published online June 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.2.77

Fonio, known to be the smallest and oldest form of millet grown in sub-Saharan Africa, has remained relatively poor of research despite its nutritional, sociocultural, agroecological, therapeutic and economic potentials. Based on systematic literature review, this critical study showed that fonio genetic breeding progress is at a low level. Genetic resources are threatened by erosion, particularly extra-early cultivars of Digitaria exilis, and mainly D. iburua species have practically disappeared in some cultivation countries including Benin. Varietal environment is characterized by lack of improved varieties and seeds, so that cultivars are ecotypes derived from natural selection often with low yields. Seeds, very tiny, are generally heterogenous, in polyvarietal mixtures because of unimproved systems and management by farmers. These ecotypes are susceptible to stem lodging and seed shattering. An exhaustive list of fonio genetic resources from West and Central Africa into catalog remains to be documented. There is a need for regional and international networking of fonio researchers with institutional support for harmonizing germplasm characterization methods, will facilitate descriptors development for all countries. It is necessary to consider in this work wild relative species that have potential genes of resistance/tolerance to biotic and abiotic stress. Starting from autogamy and apomixis revealed on fonio, homogenization program using pureline and mass selection of cultivars could enable rapid release of homogeneous and higher yielding materials to farmers and processors. Development of early and yielded varieties, with upright stem and coarse grains, resistant to lodging, shattering, and facilitating mechanical harvesting would enhance effective production revival.

Citations

Citations to this article as recorded by  
  • Enhancing pasta quality through substitution of wheat with acha, sorghum and Cirina forda powder
    Ibukunoluwa M. Adeyemo, Patricia O. Laleye, Kolawole O. Falade
    Journal of Food Measurement and Characterization.2026; 20(4): 6358.     CrossRef
  • Phylogenetics and evolution of Digitaria grasses, including cereal crops fonio, raishan and Polish millet
    George P Burton, Paolo Ceci, Lorna MacKinnon, Lizo E Masters, Noro Fenitra Harimbao Randrianarimanana, Philippa Ryan, Colin G N Turnbull, Tiziana Ulian, Maria S Vorontsova
    Annals of Botany.2026; 137(1): 141.     CrossRef
  • Climate resilient millets: emerging paradigms for the rising paradox
    Thamizh Iniyan Arinarayanasamy, Ameena Premnath, Natarajan Balakrishnan, Paramasivam Jeyaprakash, Sudha Manickam, Vanniarajan Chockalingam, Raveendran Muthurajan
    Genetic Resources and Crop Evolution.2025; 72(4): 3875.     CrossRef
  • Meta-analysis of fonio production systems: prospects for advancing food sustainability and security
    Dolapo B. Adelabu
    Cogent Food & Agriculture.2025;[Epub]     CrossRef
  • Arbuscular Mycorrhizal Fungi and Soil Enzyme Activities in Different Fonio Millet (Digitaria exilis Stapf.) Agroecosystems in Senegal
    Fatou Ndoye, Ibou Diop, Mame Codou Gueye, Oumar Sadio, Mame Oureye Sy, Diegane Diouf, Aboubacry Kane, Abdala Gamby Diedhiou
    Journal of Pure and Applied Microbiology.2024; 18(3): 1866.     CrossRef
  • Revitalization of small millets for nutritional and food security by advanced genetics and genomics approaches
    J. Lydia Pramitha, Jeeva Ganesan, Neethu Francis, Ravikesavan Rajasekharan, Jenita Thinakaran
    Frontiers in Genetics.2023;[Epub]     CrossRef
  • The potentialities of omics resources for millet improvement
    Banshidhar, Saurabh Pandey, Ashutosh Singh, Priyanka Jaiswal, Mithilesh Kumar Singh, Khem Raj Meena, Satish Kumar Singh
    Functional & Integrative Genomics.2023;[Epub]     CrossRef
  • Impact of climate change and adaptations for cultivation of millets in Central Sahel
    Ahmed Abubakar, Mohd Yusoff Ishak, Md. Kamal Uddin, Aminu Sulaiman Zangina, Mohammad Hadi Ahmad, Samir Shehu Danhassan
    Environmental Sustainability.2023; 6(4): 441.     CrossRef
  • Grain yield response of fonio (Digitaria exilis) varieties to fertilizer and cost- effectiveness under two different production systems in The Gambia
    Lamin B Sonko, L Dibba, J Camara, DNA Trawally, MN Faye, DB Jallow, A Nyassi, M Jobe
    African Journal of Food, Agriculture, Nutrition and Development.2022; 22(106): 19062.     CrossRef
  • Mangrove rice biodiversity valorization in Guinea Bissau. A bottom-up approach
    Franco Tesio, Filippo Camerini, Giovanni Maucieri, Carlo Bertini, Streng Cerise
    Experimental Agriculture.2021; 57(4): 244.     CrossRef
  • Fonio grains: Physicochemical properties, nutritional potential, and food applications
    Fan Zhu
    Comprehensive Reviews in Food Science and Food Safety.2020; 19(6): 3365.     CrossRef
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Research Article
Expression Characteristics of LSH Genes in Brassica Suggest their Applicability for Modification of Leaf Morphology and the Use of their Promoter for Transgenesis
Xiangshu Dong, Jeongyeo Lee, Ill-Sup Nou, Yoonkang Hur
Plant Breed. Biotech. 2014;2(2):126-138.   Published online June 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.2.126

The functions of DUF640/ALOG (Arabidopsis LSH1 and Oryza G1) domain proteins, which are found in most land plants, have not been well characterized, but some of these proteins regulate inflorescence architecture in rice and specify organ boundaries in Arabidopsis. Arabidopsis DUF640-domain genes are initially identified as LIGHT-SENSITIVE HYPOCOTYLS (LSH) genes. Chinese cabbage leaves have large, white midribs and photosynthetic leaf blades (or lamina). A DUF640 domain gene of Brassica rapa, BrLSH2, is specifically expressed in the midrib of Chinese cabbage. Arabidopsis and rice possess ten LSH family genes, but B. rapa has 24 LSH genes, which can be categorized into two or four groups based on sequence identity. Here, we examined the expression patterns of the LSHs in various Brassica species and analyzed the promoter sequence of the BrLHS2 gene. The transcript levels of most LSH genes were very high in the midrib but low in the leaf blade. These genes were evenly expressed throughout the petiole region of Korean cabbage and highly expressed in the leaf base region near the stem and in the border area in B. oleracea. In addition, BrLSHs were expressed in both bundle and mesophyll cells of the midrib. These expression patterns suggest the possible use of these genes to generate leafy vegetables with altered leaf morphology. The BrLSH2 promoter, which contains auxin- and cytokinin-responsive elements as well as leaf development-related elements, may confer midrib-specific expression, suggesting that this promoter may be useful for the production of midrib-targeted transgenic Chinese cabbage.

Citations

Citations to this article as recorded by  
  • Genome-wide analysis of LSH genes reveals evolutionary patterns in Rosaceae and a positive role for MdLSH10b in adventitious root formation
    Xi Li, Shuyang Gu, Donglin Huang, Liu Cong, Yawen Shen, Yujie Zhao, Wanyu Xu, Pengbo Hao, Kunxi Zhang, Miaomiao Wang, Jian Jiao, Chunhui Song, Ran Wan, Jiangli Shi, Tuanhui Bai, Shangwei Song, Yu Liu, Jiancan Feng, Xianbo Zheng
    Plant Physiology and Biochemistry.2026; 231: 110983.     CrossRef
  • Genome-wide identification and characterization of ALOG domain genes in Rosa
    Feng Chen, Bo Lv, Jiaqi Guo, Jurong Song, Cong Guo, Jie Yang, Jianguo Lin, Yuanyuan Yang, Fayun Xiang
    Frontiers in Plant Science.2025;[Epub]     CrossRef
  • ALOG/LSHs: a novel class of transcription factors that regulate plant growth and development
    Gouranga Upadhyaya, Vishmita Sethi, Annayasa Modak, Sreeramaiah N Gangappa, Kishore Panigrahi
    Journal of Experimental Botany.2025; 76(3): 836.     CrossRef
  • The Characterization of Constitutive Promoters in Chrysanthemum (Chrysanthemum morifolium Ramat)
    Eun Jung Suh, So Youn Won, Seong-Kon Lee, Sang Ryeol Park
    Korean Journal of Breeding Science.2024; 56(3): 179.     CrossRef
  • Whole transcriptome analysis and construction of a ceRNA regulatory network related to leaf and petiole development in Chinese cabbage (Brassica campestris L. ssp. pekinensis)
    Fengyan Shi, Zifan Zhao, Yang Jiang, Song Liu, Chong Tan, Chuanhong Liu, Xueling Ye, Zhiyong Liu
    BMC Genomics.2023;[Epub]     CrossRef
  • Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes
    Myungjin Lee, Xiangshu Dong, Hayong Song, Ju Yeon Yang, Soyun Kim, Yoonkang Hur
    Genes & Genomics.2020; 42(10): 1151.     CrossRef
  • Genome-wide identification and characterization of the ALOG gene family in Petunia
    Feng Chen, Qin Zhou, Lan Wu, Fei Li, Baojun Liu, Shuting Zhang, Jiaqi Zhang, Manzhu Bao, Guofeng Liu
    BMC Plant Biology.2019;[Epub]     CrossRef
  • Defense responses against the sorghum anthracnose pathogen in leaf blade and midrib tissue of johnsongrass and sorghum
    Ezekiel Ahn, Louis K. Prom, Gary Odvody, Clint Magill
    Physiological and Molecular Plant Pathology.2019; 106: 81.     CrossRef
  • Genome-Wide Identification and Characterization of wALOG Family Genes Involved in Branch Meristem Development of Branching Head Wheat
    Wenzhi Nan, Shandang Shi, Diddugodage Chamila Jeewani, Li Quan, Xue Shi, Zhonghua Wang
    Genes.2018; 9(10): 510.     CrossRef
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