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Research Article

Differential Expression of β-1,3-Glucanase Transcripts Induced by Pathogens in the Leaves of Vitis flexuosa

Plant Breeding and Biotechnology 2014;2(2):176-183.
Published online: June 30, 2014

Department of Horticulture & Life Science, Yeungnam University, Gyeongsan 712-749, Korea

*Corresponding author: Hae Keun Yun, haekeun@ynu.ac.kr, Tel: +82-53-810-2942, Fax: +82-53-810-4659
• Received: June 6, 2014   • Revised: June 19, 2014   • Accepted: June 23, 2014

Copyright © 2014 The Korean Society of Breeding Science

This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Differential Expression of β-1,3-Glucanase Transcripts Induced by Pathogens in the Leaves of Vitis flexuosa
Plant Breed. Biotech.. 2014;2(2):176-183.   Published online June 30, 2014
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Differential Expression of β-1,3-Glucanase Transcripts Induced by Pathogens in the Leaves of Vitis flexuosa
Plant Breed. Biotech.. 2014;2(2):176-183.   Published online June 30, 2014
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Differential Expression of β-1,3-Glucanase Transcripts Induced by Pathogens in the Leaves of Vitis flexuosa
Image Image Image
Fig. 1 Multiple amino acid sequence alignment of V. flexuosa β-1,3-glucanase (Glu) transcripts using the CLC Main Workbench (Ver. 4.0, CLC Bio, Aarhus, Denmark). Vv: Vitis vinifera, Vf: Vitis flexuosa. Glu proteins and accession numbers: VvGlu (DQ267748.1), VfGlu2735 (Locus 2735, NS-0399-000001), VfGlu5391 (Locus 5391, NS-0400-000001), VfGlu34359 (Locus 34359, NS-0402-000001), and VfGlu48103 (Locus 48103, NS-0401-000001).
Fig. 2 Phylogenetic tree of VvGlu (DQ267748.1) and other β-1,3-glucanase proteins from Vitis flexuosa transcripts VfGlu2735 (Locus 2735, NS-0399-000001), VfGlu5391 (Locus 5391, NS-0400-000001), VfGlu34359 (Locus 34359, NS-0402-000001), and VfGlu48103 (Locus 48103, NS-0401-000001).
Fig. 3 Expression of β-1,3-glucanase (Glu) genes by quantitative real-time PCR analysis of V. flexuosa leaves inoculated with pathogens. Transcript levels were calculated using the standard curve method from triplicate data with the grapevine actin gene as an internal control and non-treated leaves (at time zero) as a reference sample. The results represent the mean fold increase in mRNA level over non-treated leaves relative to the 1x expression level. Results are the means of triplicate data from three experiments. Bars indicate the standard deviation. VvGlu (DQ267748.1), VfGlu2735 (Locus 2735, NS-0399-000001), VfGlu5391 (Locus 5391, NS-0400-000001), VfGlu34359 (Locus 34359, NS-0402-000001), and VfGlu48103 (Locus 48103, NS-0401-000001).
Differential Expression of β-1,3-Glucanase Transcripts Induced by Pathogens in the Leaves of Vitis flexuosa

Sequences of primers used for real-time PCR analysis in this study.

Name Accession no. or NABICz) ID Primer sequences
β-1,3-glucanase 1 DQ267748.1 5′-GGGTTTTTATTGGCAACCCTTC-3′
5′-GCTACCACTTGTGATGCTGGTG-3′
β-1,3-glucanase 2 (Locus 2735-VfGlu2735) NS-0399-000001 5′-CGTTCAGAGTGCAATAACCTCCT-3′
5′-CGAGGACGGCTGAATATGTTG-3′
β-1,3-glucanase 1 (Locus 5391- VfGlu5391) NS-0400-000001 5′-GCTTGACCTCAGGGTAGTGGAA-3′
5′-TCAAGGTGGGCAGGCTTAGTAG-3′
β-1,3-glucanase 1 (Locus 34359- VfGlu34359) NS-0402-000001 5′-GAATCTCGATCAGGCCTTGAGA-3′
5′-GAACTGCAGTGGAAAAGCTGGT-3′
β-1,3-glucanase 1 (Locus 48103- VfGlu48103) NS-0401-000001 5′-GCGATGTAGCGGAACTTCACTT-3′
5′-AGCTACCTGGGTGCAAAACAAC-3′
VACT AB372563 5′-ACGAGAAATCGTGAGGGATG-3′
5′-ATTCTGCCTTTGCAATCCAC-3′

z)NABIC - National Agricultural Biotechnology Information Center, RDA, Korea.

Identity of deduced amino acid from alignment of β-1,3-glucanase (Glu) genes of V. flexuosa transcripts. Glu proteins and accession numbers: VvGlu (DQ267748.1), VfGlu2735 (Locus 2735, NS-0399-000001), VfGlu5391 (Locus 5391, NS-0400-000001), VfGlu34359 (Locus 34359, NS-0402-000001), and VfGlu48103 (Locus 48103, NS-0401-000001).

VvGlu VfGlu2735 VfGlu5391 VfGlu34359 VfGlu48103
VvGlu 59.8 58.4 49.0 55.3
VfGlu2735 59.8 59.3 50.4 96.9
VfGlu5391 58.4 59.3 48.5 46.0
VfGlu34359 49.0 50.4 48.5 22.0
VfGlu48103 55.3 96.9 46.0 22.0
Table 1 Sequences of primers used for real-time PCR analysis in this study.

NABIC - National Agricultural Biotechnology Information Center, RDA, Korea.

Table 2 Identity of deduced amino acid from alignment of β-1,3-glucanase (Glu) genes of V. flexuosa transcripts. Glu proteins and accession numbers: VvGlu (DQ267748.1), VfGlu2735 (Locus 2735, NS-0399-000001), VfGlu5391 (Locus 5391, NS-0400-000001), VfGlu34359 (Locus 34359, NS-0402-000001), and VfGlu48103 (Locus 48103, NS-0401-000001).