Skip to main navigation Skip to main content
  • KSBS
  • E-Submission

Plant Breed. Biotech. : Plant Breeding and Biotechnology

OPEN ACCESS
ABOUT
BROWSE ARTICLES
EDITORIAL POLICIES
FOR CONTRIBUTORS

Page Path

7
results for

"Yang Qin"

Article category

Keywords

Publication year

Authors

"Yang Qin"

Research Articles
Molecular Characterization of CRISPR-Cas9-Edited Rice Across Generations and Associated Technical Challenges in Nucleotide Editing Tracing
Yang Qin, Sang Dae Yun, Hye Lin Kim, Je Yeon Choi, Myung-Ho Lim, Sung Aeong Oh, Soon Ki Park
Plant Breed. Biotech. 2025;13:207-228.
Published online October 20, 2025
DOI: https://doi.org/10.9787/PBB.2025.13.207

CRISPR (clustered regularly interspaced short palindromic repeats) gene-edited (GEd) crops have demonstrated significant potential to enhance global food security in the face of escalating climate challenges and rapid population growth. Since 2019, for regulatory purposes, the United States (U.S.) and several other countries have recognized transgene-free, genome-edited lines as equivalent to conventionally bred varieties. Notably, the first genome-edited food product, Calyno™ soybean oil, was commercialized in the U.S. and marketed as a non-genetically modified organism (GMO) item. Recently, regulatory frameworks, such as the enactment of the Precision Breeding Law in the United Kingdom, the European Union’s New Genomic Techniques (NGT) legislation, and the repeal of the SECURE Rule in the United States, have further established guidelines permitting the use of genome-edited lines in agriculture similar to with conventionally bred crops, provided that these lines are free of transgenic elements. In Korea, researchers and policymakers are actively engaging in discussions to establish a preliminary review committee for GEd crops to align regulatory practices with international trade standards. Thus, this study aimed to evaluate two gene-edited rice lines for generational stability in terms of molecular characteristics, focusing on edited nucleotide sequences, gene expression, target phenotypes, the presence of transgene elements, and potential off-target effects across multiple generations. Additionally, several technical challenges in nucleotide editing tracing emerged during the evaluation process that warrant further attention. The findings presented in this study are expected to offer valuable insights for shaping the regulatory framework in Korea for CRISPR-based gene-edited crops.

Citations

Citations to this article as recorded by  
  • CRISPR/Cas9 Mediated Genome Editing for Enhancing Abiotic Stress Tolerance in Rice: An Omics Guided Perspective
    Mahavir Joshi, Pari Panwar, Smile Sharma, Bharat Sagar, Sukhminderjit Kaur, Manikant Tripathi
    Molecular Biotechnology.2026;[Epub]     CrossRef
  • 65 View
  • 0 Download
  • 1 Crossref
TALEN-mediated bar-knockout Rice Production and Transcriptome Profiling
Yang Qin, Tae-Sung Park, Youn Sung Cho, Myung-Ho Lim
Plant Breed. Biotech. 2021;9(1):32-44.   Published online March 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.1.32

Gene editing technologies such as transcription activator-like effector nucleases (TALENs) and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) systems have been developed to create targeted DNA mutagenesis in many crop plants. This report describes application of the TALEN system to generate bialaphos resistance (bar)-knockout null segregants in herbicide-tolerant rice (Ba15) and microarray analysis on transcriptome changes of mutated lines, to identify unexpected effects resulting from off-targets. We generated 41 T0 plants and identified TALEN-mediated bar sequence mutations in 14 of them. Non-target site single nucleotide polymorphisms (SNPs) and small insertion/deletions (InDels) accounted for a large proportion of the mutations. Segregations of phosphinothricin acetyltransferase (PAT) protein expression levels were observed in T1 generations of two lines, R6 and R9. In addition, most T1 offspring harbored the TALE-R expression cassette and acquired some de novo mutations that were not inherited from their T0 parents. Three bar-knockout T1 lines were tested for PAT protein expression in progeny seedlings, and their T2 plants possessed inactive bar. We selected three bar-knockout T2 plants that were TALE-DNA-free for microarray analysis, aiming to understand the transcriptome differences between mutated null segregants and their recipient line. Only 31 differentially expressed genes (DEGs) were identified in the bar-knockout rice lines, possibly resulting from somaclonal variations from the in vitro cell culture process. Taken together, TALEN-mediated bar mutations have little effect on the whole transcriptome profile of rice. We believe our results will be helpful to study unexpected consequences in gene-edited crops.

Citations

Citations to this article as recorded by  
  • Advanced gene editing techniques for enhancing disease resistance and climate resilience in crops
    Zareen Sarfraz, Yusra Zarlashat, Alia Ambreen, Muhammad Mujahid, Muhammad Shahid Iqbal, Muhammad Nadeem
    Functional Plant Biology.2025;[Epub]     CrossRef
  • Recent advances in site-specific transgene insertion into the maize genome using recombinases and genome editing endonucleases
    Marcos Fernando Basso, Maisa de Siqueira Pinto, Juliana Vieira Almeida Nonato, Ricardo Augusto Dante, Juliana Erika de Carvalho Teixeira Yassitepe
    Frontiers in Plant Science.2025;[Epub]     CrossRef
  • The Role of Membrane Transporters in the Biofortification of Zinc and Iron in Plants
    T. P. Ajeesh Krishna, T. Maharajan, S. Antony Ceasar
    Biological Trace Element Research.2023; 201(1): 464.     CrossRef
  • 5 View
  • 0 Download
  • 3 Crossref
Flanking Sequence and Copy-Number Analysis of Transformation Events by Integrating Next-Generation Sequencing Technology with Southern Blot Hybridization
Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Hyun-Suk Cho, Seong-Kon Lee
Plant Breed. Biotech. 2017;5(4):269-281.   Published online December 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.4.269

With the continual development of genetically modified (GM) crops, it has become necessary to develop detailed and effective molecular characterization methods to select candidate events from a large pool of transformation events. Relative to traditional molecular analysis methods such as the polymerase chain reaction (PCR) and Southern blot hybridization, next generation sequencing (NGS) technology for whole-genome sequencing of complex crop genomes had proven comparatively useful for in-depth molecular characterization. In this study, four transformation events, including one in Bacillus thuringiensis (Bt)-resistant rice, one in resveratrol-producing rice, and two in beta-carotene-enhanced soybeans, were selected for molecular characterization. To merge NGS analysis and Southern blot-hybridization results, we confirmed the transgene insertion sites, insertion construction, and insertion numbers of these four transformation events. In addition, the read-coverage depth assessed by NGS analysis for inserted genes might provide consistent results in terms of inserted T-DNA numbers in case of complex insertion structures and highly duplicated donor genomes; however, PCR-based methods can produce incorrect conclusions. Our combined method provides an effective and complete analytical approach for whole-genome visual inspection of transformation events that require biosafety assessment.

Citations

Citations to this article as recorded by  
  • Molecular Characterization of CRISPR-Cas9-Edited Rice Across Generations and Associated Technical Challenges in Nucleotide Editing Tracing
    Yang Qin, Sang Dae Yun, Hye Lin Kim, Je Yeon Choi, Myung-Ho Lim, Sung Aeong Oh, Soon Ki Park
    Plant Breeding and Biotechnology.2025;[Epub]     CrossRef
  • Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus tauri
    Julie Thomy, Frederic Sanchez, Marta Gut, Fernando Cruz, Tyler Alioto, Gwenael Piganeau, Nigel Grimsley, Sheree Yau
    Cells.2021; 10(3): 664.     CrossRef
  • Comparative transcriptome profiling of different tissues from beta-carotene-enhanced transgenic soybean and its non-transgenic counterpart
    Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Seong-Kon Lee
    Plant Cell, Tissue and Organ Culture (PCTOC).2020; 140(2): 341.     CrossRef
  • 12 View
  • 0 Download
  • 3 Crossref
Assessment of the Response of Beta Carotene Enhanced Transgenic Soybeans to Soybean Mosaic Virus (SMV)
Yang Qin, Kong-Sik Shin, Jang-Kyun Seo, Myung-Ho Lim, Young-Soo Chung, Hyun-Suk Cho, Seong-Kon Lee, Hee-Jong Woo
Plant Breed. Biotech. 2016;4(2):158-169.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.158

Beta-carotene, a defense chemical, is synthesized by the carotenoid biosynthesis pathway. In the present study, a transgenic soybean line, with a single copy insertion of phytoene synthase and carotene desaturase genes, having high beta-carotene content was studied for its response to systemically inoculated Soybean mosaic virus (SMV). Beta-carotene-enhanced transgenic soybean showed similar leaf and seed symptoms, viral RNA, and protein expression compared to the non-genetically modified (GM) ‘Kwangan’ control. Total antioxidant contents in the non-GM ‘Kwangan’ line were increased after SMV attack in both leaves and seeds; however, the antioxidant contents in the beta-carotene-enhanced soybean line have no significant changes. In addition, both GM and non-GM soybean were detected increased lipid hydroperoxide concentrations in leaves and seeds after SMV infection, even though they did not reach a statistical significant level. Abscisic acid (ABA) levels in beta-carotene-enhanced transgenic soybean seeds was determined 35-fold increase after SMV infections caused a lower seed germination rate and a higher SMV transmission rate to subsequent generations, compared to those of non-GM ‘Kwangan’. Thus, we concluded that the additional production of beta-carotene did not confer resistance of beta-carotene-enhanced transgenic soybean to SMV infections, but caused mass accumulations of ABA in seeds.

Citations

Citations to this article as recorded by  
  • Comparison of the Nutritional Compositions of hybrid Soybean between β–carotene Enhanced Transgenic Soybean and wild Soybean
    Sung-Dug Oh, Ye-Jin Jang, Gyeong Min Lee, Kijong Lee, Sang Jae Suh, Tae-Hoon Ryu, Soo-Yun Park
    Journal of the Korean Society of International Agricultue.2020; 32(4): 339.     CrossRef
  • Comparative transcriptome profiling of different tissues from beta-carotene-enhanced transgenic soybean and its non-transgenic counterpart
    Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Seong-Kon Lee
    Plant Cell, Tissue and Organ Culture (PCTOC).2020; 140(2): 341.     CrossRef
  • Nutritional composition analysis for beta-carotene-enhanced transgenic soybeans (Glycine max L.)
    Yang Qin, Soo-Yun Park, Seon-Woo Oh, Myung-Ho Lim, Kong-Sik Shin, Hyun-Suk Cho, Seong-Kon Lee, Hee-Jong Woo
    Applied Biological Chemistry.2017; 60(3): 299.     CrossRef
  • 7 View
  • 0 Download
  • 3 Crossref
T-DNA Inheritance Stability of Resveratrol Rice Iksan526 over Multi-generations
Yang Qin, Hong-Il Ahn, Su-Yoen Park, Myung-Ho Lim, Hee-Jong Woo, Kong-Sik Shin, Jin-Hyoung Lee, Hyun-Suk Cho, So-Hyeon Baek, Soon-Ki Park, Soon-Jong Kweon
Plant Breed. Biotech. 2014;2(3):268-275.   Published online September 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.3.268

Confirmation of T-DNA inheritance and stability requires testing of several parameters such as phenotypic performance of transgenic lines, transgene integrity structure and expression stability for at least three consecutive generations, and Mendelian inheritance analysis, which are very important to transgenic breeding and commercialization of genetically modified crops (GMOs). In the present study, we measured nine agronomic and yield-related traits of Iksan526 and confirmed stable phenotypic performance comparing to the donor variety Dongjin over three years. Transgene integrity structure, flanking sequence, functional element copy numbers, absence of backbone sequence and transgene expression were all verified in Iksan526 over three consecutive generations, indicating a stable inheritance of the transgene. In addition, phenotypic and genotypic segregation were analyzed on F2 and F3 populations derived from a cross of Dongjin/Iksan526, and results complied with Mendel’s law of segregation based on single transgene locus. This study demonstrated detailed analyses and confirmation of transgene event Iksan526 which is crucial for commercialization of GMO.

Citations

Citations to this article as recorded by  
  • Analysis of T-DNA integration events in transgenic rice
    Wankui Gong, Yun Zhou, Rui Wang, Xiaoli Wei, Lei Zhang, Yan Dai, Zhen Zhu
    Journal of Plant Physiology.2021; 266: 153527.     CrossRef
  • Genetic Stability, Inheritance Patterns and Expression Stability in Biotech Crops
    Laura Privalle, Patricia Back, Apurv Bhargava, Zach Bishop, Krystal Cisneros, Isabelle Coats, Ine Criel, Lien Dhondt, Travis Draughn, Barb Fowler, Brad Franklin, Durba Ghoshal, Jim Lor, Jennifer Massengil, Sofie Moens, Tyson Mooney, Dannyel Nelson, Karoli
    OBM Genetics.2020; 04(04): 1.     CrossRef
  • 9 View
  • 0 Download
  • 2 Crossref
Molecular Characterization of Transgenic Rice Producing Resveratrol
Yang Qin, Hong-Il Ahn, Soon-Jong Kweon, So-Hyeon Baek, Kong-Sik Shin, Hee-Jong Woo, Hyun-Suk Cho, Jin-Hyoung Lee, Myung-Ho Lim
Plant Breed. Biotech. 2013;1(4):406-415.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.406

Resveratrol, a plant phenolic compound, has potential therapeutic benefits due to its antioxidant properties. This is substantiated by previous studies that show that resveratrol derived from rice grains is an effective treatment agent for metabolic syndrome. Here, we characterized the T-DNA sequence, inserted T-DNA structure, copy number, integrity of the transgene locus, resveratrol synthase gene expression and resveratrol contents in the grains of two resveratrol transgenic rice lines, Iksan515 and Iksan526. The T-DNA transformation vector contained two expression cassettes of the resveratrol synthase gene under the control of the ubiquitin promoter and the bar selection marker gene under the control of the CaMV35S promoter. Flanking sequence analysis indicated that the T-DNAs were inserted into intergenic regions of chromosome 4 for Iksan515 and chromosome 12 for Iksan526. Two T-DNAs connected in an inverted repeat structure at a single locus of the rice genome were identified by whole genome sequencing and Southern blot hybridization in both Iksan515 and Iksan526. No novel open reading frames (ORFs) around insertion sites, sequences encoding allergenic or toxic protein, or other unintended effects by T-DNA insertion were found in either case. In addition, resveratrol synthase gene expression in leaves and resveratrol detection in brown rice grains suggested the successful expression of the inserted foreign resveratrol synthase gene in two transgenic rice lines.

Citations

Citations to this article as recorded by  
  • Assessment of potential gene flow from resveratrol-enriched genetically modified rice to non-genetically modified rice and weedy rice
    Sang Dae Yun, Sung Dug Oh, Yang Qin, Myung-Ho Lim, Hye Lin Kim, Je Yeon Choi, Eun Young Kim, Sung Aeong Oh, Seong-Kon Lee, Doh-Won Yun, Tae-Hun Ryu, Jae Kwang Kim, Soon Ki Park
    Journal of Plant Biotechnology.2025;[Epub]     CrossRef
  • Arachis hypogaea resveratrol synthase 3 alters the expression pattern of UDP-glycosyltransferase genes in developing rice seeds
    Choonseok Lee, Woo-Jong Hong, Ki-Hong Jung, Ha-Cheol Hong, Dool-Yi Kim, Hyun-Choong Ok, Man-Soo Choi, Soo-Kwon Park, Jaehyun Kim, Hee-Jong Koh, Sara Amancio
    PLOS ONE.2021; 16(1): e0245446.     CrossRef
  • 12 View
  • 0 Download
  • 2 Crossref
Bioassay for the Response of Resveratrol Transgenic Rice Lines to Bacterial and Fungal Diseases
Yang Qin, Suk-Man Kim, Hong-Il Ahn, Jin-Hyoung Lee, So-Hyeon Baek, Kong-Sik Shin, Hee-Jong Woo, Hyun-Suk Cho, Soon-Jong Kweon, Myung-Ho Lim
Plant Breed. Biotech. 2013;1(3):253-261.   Published online September 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.3.253

Resveratrol is a stilbenoid and phytoalexin produced in response to stresses, such as wounding, and pathogen attacks by bacteria or fungi. Two resveratrol rice lines, Iksan515 and Iksan526, were used to examine resistance against Korean pathogen races for bacterial blight, leaf blast, and brown leaf spot. The screening test for bacterial blight demonstrated an increased susceptibility of both transgenic lines to K1 race, and a more susceptible Iksan515 to K2. Phenotypic evaluation for resistance to brown leaf spot also revealed the susceptibility of Iksan526 to the disease which did not significantly differ from the isogenic variety ‘Dongjin’, and a slightly more susceptible Iksan515 to the disease compared to check. When the lines were screened with three races (KJ301, KJ101 and KJ133) of leaf blasts in the field, both transgenic lines exhibited resistance but at the same level with ‘Dongjin’. Our overall findings suggest that foreign phytoalexin resveratrol production in transgenic rice lines transformed with resveratrol synthase gene did not confer resistance against fungal and bacterial diseases.

Citations

Citations to this article as recorded by  
  • Effect of genetically modified rice producing resveratrol on the soil microbial communities
    Soo-In Sohn, Young-Ju Oh, Byung-Yong Kim, Soon-Jong Kweon, Hyun-Suk Cho, Tae-Hoon Ryu
    Journal of the Korean Society for Applied Biological Chemistry.2015; 58(6): 795.     CrossRef
  • 14 View
  • 0 Download
  • 1 Crossref