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"Remnyl Joyce Pellerin"

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"Remnyl Joyce Pellerin"

Research Article
Characterization of Chromosome-Specific Microsatellite Repeats and Telomere Repeats Based on Low Coverage Whole Genome Sequence Reads in Panax ginseng
Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Woojong Jang, Hyun Hee Kim, Tae-Jin Yang
Plant Breed. Biotech. 2018;6(1):74-81.   Published online March 1, 2018
DOI: https://doi.org/10.9787/PBB.2018.6.1.74

Repetitive DNA elements are ubiquitous in plant genomes. Although repeats provide relevant information for cytogenetic, evolutionary, and genomic studies, identifying and characterizing their sequence and chromosomal distribution are not always easily achieved through conventional methods. However, a high-throughput identification of genomic repeats can be obtained with short reads from next-generation sequencing data. Here, we identified the telomeric and two chromosome-specific repeats in Panax ginseng using low-coverage whole genome sequence data. The telomeric repeat sequence is same with the canonical angiosperm sequence, (TTTAGGG)n, and localized mostly in every chromosome termini, except for an additional interstitial location in chromosome 10. A dinucleotide (GA) microsatellite, PgGA15, with total genome representation (GR) of more than 33 kb localized in the long arm of chromosome 20. An 11-bp minisatellite, Pgms1, with more than 58 kb of GR localized in the long arm of chromosome 1. This study provides chromosome-specific markers for cytogenetic studies in P. ginseng.

Citations

Citations to this article as recorded by  
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  • Identification and functional analysis of COLD-signaling-related genes in Panax ginseng
    Jeongeui Hong, Hojin Ryu
    Journal of Plant Biotechnology.2023;[Epub]     CrossRef
  • Cell cycle synchronization in Panax ginseng roots for cytogenomics research
    Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Jin Yang, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2022; 63(1): 137.     CrossRef
  • Gibberellin Signaling Promotes the Secondary Growth of Storage Roots in Panax ginseng
    Chang Pyo Hong, Jinsoo Kim, Jinsu Lee, Seung-il Yoo, Wonsil Bae, Kyoung Rok Geem, Jin Yu, Inbae Jang, Ick Hyun Jo, Hyunwoo Cho, Donghwan Shim, Hojin Ryu
    International Journal of Molecular Sciences.2021; 22(16): 8694.     CrossRef
  • Functional characterization of gibberellin signaling-related genes in Panax ginseng
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    Journal of Plant Biotechnology.2021; 48(3): 148.     CrossRef
  • Interstitial Telomeric-like Repeats (ITR) in Seed Plants as Assessed by Molecular Cytogenetic Techniques: A Review
    Alexis J. Maravilla, Marcela Rosato, Josep A. Rosselló
    Plants.2021; 10(11): 2541.     CrossRef
  • FISH Karyotype Comparison ofPlatycodon grandiflorus(Jacq.) A. DC. ‘Jangbaek’ and Its Colchicine-Induced Tetraploid ‘Etteumbaek
    Eliazar Alumbro Peniton Jr., Yurry Um, Hyun Hee Kim
    Plant Breeding and Biotechnology.2020; 8(4): 389.     CrossRef
  • Five-color fluorescence in situ hybridization system for karyotyping of Panax ginseng
    Nomar Espinosa Waminal, Tae-Jin Yang, Jun-Gyo In, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2020; 61(5): 869.     CrossRef
  • FISH Karyotype Comparison between Wild and CultivatedPerillaSpecies Using 5S and 45S rDNA Probes
    Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Ho Kim, Hyun Hee Kim
    Plant Breeding and Biotechnology.2019; 7(3): 237.     CrossRef
  • Rapid and Efficient FISH using Pre-Labeled Oligomer Probes
    Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Nam-Soo Kim, Murukarthick Jayakodi, Jee Young Park, Tae-Jin Yang, Hyun Hee Kim
    Scientific Reports.2018;[Epub]     CrossRef
  • Identification of ABSCISIC ACID (ABA) signaling related genes in Panax ginseng
    Jeongeui Hong, Hogyum Kim, Hojin Ryu
    Journal of Plant Biotechnology.2018; 45(4): 306.     CrossRef
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