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"Duplication"

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"Duplication"

Review Article

Recruiting Distant Hybridization for Reshaping Meiotic Recombination
Mohammad Taqi Rabbani, Gyanisha Nayak
Plant Breed. Biotech. 2023;11(3):168-184.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.168

Gene introgression that involves the transfer of favorable allelic diversity for broadening the genetic base of breeding materials is a powerful 'toolkit' for creating novel allelic combinations during plant sexual reproduction. It is a key factor playing an important role in plant breeding schemes by reintroducing genetic variation at selective sweeps or introgression of desirable traits required for the development of new varieties. Meiosis is a specialized cell division not only enables sexually reproducing organisms to reduce their genomic constituent by half, also provides indefinitely novel combinations of allelic diversity by reshuffling the parental genetic makeup. Crossing over that takes place during prophase-I facilitates the meiotically exchange of genetic materials between homolog pairs as well as their accurate segregations. It is tightly modulated and many intrinsic factors and extrinsic agents are associated with regulation of the process, however, the modulation of meiosis is possible. Although, advanced approaches such as CRIPR/Cas and Virus-Induced gene Silencing (VIGS) have opened new horizons for manipulation of meiotic recombination, distant hybridization could effectively influence the frequency and distribution of homologous (HR) and particularly homoeologous recombination (HeR). In this review, we provide a brief overview of the recent advances in the plant mechanisms for manipulation of HR and HeR employing distant hybridization.

Citations

Citations to this article as recorded by  
  • Validation of SNP Markers for Diversity Analysis, Quality Control, and Trait Selection in a Biofortified Cassava Population
    Edwige Gaby Nkouaya Mbanjo, Adebukola Ogungbesan, Afolabi Agbona, Patrick Akpotuzor, Seyi Toyinbo, Peter Iluebbey, Ismail Yusuf Rabbi, Prasad Peteti, Sharon A. Wages, Joanna Norton, Xiaofei Zhang, Adriana Bohórquez-Chaux, Hapson Mushoriwa, Chiedozie Egesi
    Plants.2024; 13(16): 2328.     CrossRef
  • Exploring genetic variability and molecular-cytogenetic profiling of rye-wheat derivatives
    Vikrant Khare, Puja Srivastava, Achla Sharma, Yousef Mohsen Feltaous, Navtej Singh Bains
    South African Journal of Botany.2024; 171: 315.     CrossRef
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Research Article
Genome-Wide Characterization and Expression Profiling of Plant-Specific PLATZ Transcription Factor Family Genes in Brassica rapa L.
Jaber Bin Azim, Md. Fahim Hassan Khan, Lutful Hassan, Arif Hasan Khan Robin
Plant Breed. Biotech. 2020;8(1):28-45.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.28

Plant AT-rich sequence and zinc-binding (PLATZ) proteins constitute a plant-specific transcription factor family with two conserved zinc-dependent DNA-binding domains. The PLATZ proteins operate significant functions in regulating plant development and resistance. To date, PLATZ genes have been studied only in a few model plants, including Arabidopsis, rice, maize and soybean, but not yet in any Brassica species. We identified 24 Brassica rapa PLATZ gene family (BrPLATZ) genes through genome-wide characterization and profiled their expression using available RNA-Sequencing data. We divided 153 PLATZ proteins from eight plant species into seven groups based on sequence alignment and phylogeny. The BrPLATZ genes were generally conserved in groups with similar motif and exon-intron distribution. The 24 BrPLATZ genes were located in eight of the ten B. rapa chromosomes, with segmental duplication detected in 20 paralogs. Analysis of Ka/Ks ratios revealed that the duplicated genes were under purifying selection. Cis-elements analysis implied that BrPLATZ genes are diverse in functions including tissue-specific, stress and hormone responsive expressions. Furthermore, expression profiling based on RNA-sequencing data revealed that the BrPLATZ genes were expressed in various tissues, with most genes preferentially expressed in flower and silique compared to other tissues. Systematic analysis revealed structural and functional diversity among BrPLATZ proteins, which indicated the possibility of diverse functions of BrPLATZ genes in development and stress resistance. The characterization of PLATZ gene family members may aid in the selection of appropriate candidate genes responsible for biological functions in B. rapa and relevant species.

Citations

Citations to this article as recorded by  
  • Molecular profiling of PLATZ gene family in pepper (Capsicum annuum L.) and overexpression of CaPLATZ6 confers enhanced resistance to anthracnose pathogen, Colletotrichum truncatum L.
    Swarna Manjari Mishra, Sravya Sruti Tamarapalli, Rukmini Mishra, Raj Kumar Joshi
    Physiological and Molecular Plant Pathology.2025; 138: 102700.     CrossRef
  • Genome-wide characterization of monoacylglycerol lipase (MAGL) gene family in soybean and functional analysis of GmMAGLs in storage lipid metabolism and drought resistance
    Haiqing Jing, Yan Sun, Bicheng Wang, Juhua Ma, Kun Wan, Zhanqian Li, Yali Zhou, Runzhi Li, Haiping Zhang, Jinai Xue
    BMC Genomics.2025;[Epub]     CrossRef
  • PLATZ transcription factors gene family in Brassica napus: genome-wide identification and expression analysis to abiotic stresses
    Sana Basharat, Pingwu Liu, Muhammad Waseem
    BMC Genomics.2025;[Epub]     CrossRef
  • RcPLATZ8 as a novel negative regulator of flowering in Rosa chinensis
    Yifang Peng, Qi Li, Yao Gong, Qian Yang, Qijing Dong, Yu Han
    Plant Cell Reports.2025;[Epub]     CrossRef
  • Exploring the Roles of the Plant AT-Rich Sequence and Zinc-Binding (PLATZ) Gene Family in Tomato (Solanum lycopersicum L.) Under Abiotic Stresses
    Bei Fan, Min Ren, Guoliang Chen, Xue Zhou, Guoting Cheng, Jinyu Yang, Huiru Sun
    International Journal of Molecular Sciences.2025; 26(4): 1682.     CrossRef
  • Genome-Wide Identification of CaPLATZ Family Members in Pepper and Their Expression Profiles in Response to Drought Stress
    Xingliang Wang, Yue Huang, Na Yang, Xue Wang, Yuanqian Wang, Wenyao Ma, Hui Zhang
    Genes.2025; 16(6): 632.     CrossRef
  • Genome wide identification and characterization of EPFL genes and its potential association with male sterility in Brassica rapa
    Kang Wang, Yongkang Wang, Xiaoyan Tang, Na Liao, Danni Yang, Wenjie Wang, Lingyun Yuan, Jinfeng Hou, Jianqiang Wu, Chenggang Wang, Guohu Chen
    Scientific Reports.2025;[Epub]     CrossRef
  • PLATZ transcription factors and their emerging roles in plant responses to environmental stresses
    Hongxia Zhang, Lu Liu, Zhenzhen Li, Shuo Wang, Li Huang, Sue Lin
    Plant Science.2025; 352: 112400.     CrossRef
  • Genome-wide analysis of the PLATZ gene family provides insights into the genome evolution of cultivated peanut (Arachis hypogaea, Leguminosae)
    Sergio Sebastián Samoluk, Guillermo Seijo
    Genetic Resources and Crop Evolution.2025; 72(4): 4809.     CrossRef
  • PLATZ transcription factors: Roles in plant growth, development, and stress adaptation
    Shanshan Zeng, Leeza Tariq, Yan Bi, Mengmeng Guo, Hui Wang, Fengming Song
    Plant Stress.2025; 18: 101075.     CrossRef
  • Genome-Wide Analysis of the PLATZ Gene Family and Identification of Seed Development-Related Genes in Flax [ Linum usitatissimum L.]
    Jing Li, Wei He, Zhigang Dai, Dongwei Xie, Jian Sun
    Journal of Natural Fibers.2024;[Epub]     CrossRef
  • GhiPLATZ17 and GhiPLATZ22, zinc-dependent DNA-binding transcription factors, promote salt tolerance in upland cotton
    Abdul Rehman, Chunyan Tian, Xiawen Li, Xiaoyang Wang, Hongge Li, Shoupu He, Zhen Jiao, Abdul Qayyum, Xiongming Du, Zhen Peng
    Plant Cell Reports.2024;[Epub]     CrossRef
  • The NAC transcription factor LuNAC61 negatively regulates fiber development in flax (Linum usitatissimum L.)
    Dongwei Xie, Jing Li, Wan Li, Lijun Sun, Zhigang Dai, Wenzhi Zhou, Jianguang Su, Jian Sun
    Journal of Integrative Agriculture.2024; 23(3): 795.     CrossRef
  • Integration of the Plant-Specific PLATZ Transcription Factors into Gene Regulatory Networks Controlling Developmental Processes
    Marie Baucher, Claire Guérin, Mondher El Jaziri, Marc Behr
    Critical Reviews in Plant Sciences.2024; 43(5): 376.     CrossRef
  • Identification and Functional Characterization of Abiotic Stress Tolerance-Related PLATZ Transcription Factor Family in Barley (Hordeum vulgare L.)
    Kangfeng Cai, Xiujuan Song, Wenhao Yue, Lei Liu, Fangying Ge, Junmei Wang
    International Journal of Molecular Sciences.2024; 25(18): 10191.     CrossRef
  • Whole-genome identification and multiple abiotic stresses expression pattern profiling analysis of PLATZ transcription factor family members in Pecan (Carya illinoensis)
    Xiaoyue Zhang, Yangang Lan, Linna Wang, Hongxia Liu, Nianqin Jiang, Wei He, Hanwei Yan, Min Wu, Yan Xiang
    International Journal of Biological Macromolecules.2023; 248: 125959.     CrossRef
  • Genome-wide analysis of MdPLATZ genes and their expression during axillary bud outgrowth in apple (Malus domestica Borkh.)
    Jiuyang Li, Yongliang Zhao, Yaohui Zhang, Feng Ye, Zhengcun Hou, Yuhang Zhang, Longjie Hao, Guofang Li, Jianzhu Shao, Ming Tan
    BMC Genomics.2023;[Epub]     CrossRef
  • Transcriptional Signatures in Contrasting Cultivars of Barley During Early Reproductive Development of Meristem
    Sampath Kumar Banoth, Harsh Chauhan
    Journal of Plant Growth Regulation.2023; 42(11): 7294.     CrossRef
  • Identification of PLATZ genes in Malus and expression characteristics of MdPLATZs in response to drought and ABA stresses
    Yaqiang Sun, Yunxiao Liu, Jiakai Liang, Jiawei Luo, Fan Yang, Peien Feng, Hanyu Wang, Bocheng Guo, Fengwang Ma, Tao Zhao
    Frontiers in Plant Science.2023;[Epub]     CrossRef
  • Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
    Lifang Zhang, Tao Yang, Zepeng Wang, Fulin Zhang, Ning Li, Weijie Jiang
    Plants.2023; 12(14): 2632.     CrossRef
  • Genome-Wide Identification of PLATZ Transcription Factors in Ginkgo biloba L. and Their Expression Characteristics During Seed Development
    Xin Han, Hao Rong, Yating Tian, Yanshu Qu, Meng Xu, Li-an Xu
    Frontiers in Plant Science.2022;[Epub]     CrossRef
  • Comprehensive Genome-Wide Analysis and Expression Pattern Profiling of PLATZ Gene Family Members in Solanum Lycopersicum L. under Multiple Abiotic Stresses
    Antt Htet Wai, Md Mustafizur Rahman, Muhammad Waseem, Lae-Hyeon Cho, Aung Htay Naing, Jong-Seong Jeon, Do-jin Lee, Chang-Kil Kim, Mi-Young Chung
    Plants.2022; 11(22): 3112.     CrossRef
  • Genome-wide identification and expression analysis of the plant-specific PLATZ gene family in Tartary buckwheat (Fagopyrum tataricum)
    Jing Li, Shan Feng, Yuchuan Zhang, Lei Xu, Yan Luo, Yuhao Yuan, Qinghua Yang, Baili Feng
    BMC Plant Biology.2022;[Epub]     CrossRef
  • Genome-Environment Association Analysis for Bio-Climatic Variables in Common Bean (Phaseolus vulgaris L.) from Brazil
    Júlio Cesar F. Elias, Maria Celeste Gonçalves-Vidigal, Andrea Ariani, Giseli Valentini, Maria da Conceição Martiniano-Souza, Mariana Vaz Bisneta, Paul Gepts
    Plants.2021; 10(8): 1572.     CrossRef
  • Genome‐wide analysis of genomic imprinting in the endosperm and allelic variation in flax
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    The Plant Journal.2021; 107(6): 1697.     CrossRef
  • Integrative analysis of metabolome and transcriptome reveals molecular regulatory mechanism of flavonoid biosynthesis in Cyclocarya paliurus under salt stress
    Lei Zhang, Zijie Zhang, Shengzuo Fang, Yang Liu, Xulan Shang
    Industrial Crops and Products.2021; 170: 113823.     CrossRef
  • Genome-wide discovery of G-quadruplexes in barley
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    Scientific Reports.2021;[Epub]     CrossRef
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  • 27 Crossref