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Volume 3(4); December 2015

Review Articles

Targeted Genome Editing for Crop Improvement
Hyeran Kim, Sang-Tae Kim, Sang-Gyu Kim, Jin-Soo Kim
Plant Breed. Biotech. 2015;3(4):283-290.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.283

Crop improvement is essential to attaining world food security and enhancing nutrition for human beings. Both conventional breeding and modern molecular breeding have contributed to increased crop production and quality. However, the time and resources for breeding practices have been limited. It takes a long time to bring a novel improved crop to the market, and the genetic sources from wild species cannot be always available for crops of our interests. Genome editing technology implemented molecular breeding can overcome those limitations of time and resource by facilitating the specific editing of plant genomes. However, there is a long-lasting argument about the safety of genetically modified organisms (GMOs). In this review, we briefly summarize the principle of genome editing tools, focusing on the CRISPR/Cas9 system and the application of these tools to plants in the service of crop engineering.

Citations

Citations to this article as recorded by  
  • Drought-Tolerant Biotech Soybean Breeding in South America: Current Status, Commercialization, and Implications for Korea’s Technology Export Strategy
    Seung Young Choi, Yong Hun Song, Seung Muk Won, Kyeong Hee Lee, Ga Ram Kim, Taeyoung Um
    Korean Journal of Breeding Science.2026; 58(1): 13.     CrossRef
  • Enhancing barley resilience: advanced genetic techniques to improve drought tolerance for sustainable cultivation under current climatic fluctuations
    Fatmah A. Safhi
    Cereal Research Communications.2025; 53(1): 17.     CrossRef
  • An Efficient Protoplast Isolation Method Using Hypocotyl in Soybean (Glycine max)
    Jaehwan Kim, Yeong Yeop Jeong, Hyunwoo Park, Pil Joon Seo, Kyung Do Kim
    Korean Journal of Breeding Science.2025; 57(1): 1.     CrossRef
  • Precision Breeding in Fruit Crops
    Shikha Jain, Jai Prakash
    RASSA Journal of Science for Society.2024; 6(1): 31.     CrossRef
  • Combination of Hairy Root and Whole-Plant Transformation Protocols to Achieve Efficient CRISPR/Cas9 Genome Editing in Soybean
    Qihui Kong, Jie Li, Shoudong Wang, Xianzhong Feng, Huixia Shou
    Plants.2023; 12(5): 1017.     CrossRef
  • Research Advances in Wheat Breeding and Genetics for Powdery Mildew Resistance
    Myoung-Hui Lee, Sumin Hong, Kyeong-Min Kim, Yurim Kim, Sun-Hwa Kwak, Kyeong-Hoon Kim, Chon-Sik Kang, Chul Soo Park, Youngjun Mo, Changhyun Choi
    Korean Journal of Breeding Science.2023; 55(3): 218.     CrossRef
  • Quality trait improvement in horticultural crops: OMICS and modern biotechnological approaches
    Tanzeel Bashir, Syed Anam Ul Haq, Salsabeel Masoom, Mwafaq Ibdah, Amjad M. Husaini
    Molecular Biology Reports.2023; 50(10): 8729.     CrossRef
  • Application of CRISPR/Cas9 technology to improve the important traits in coffee
    T J Santoso, A Sisharmini, Syafaruddin
    IOP Conference Series: Earth and Environmental Science.2022; 974(1): 012082.     CrossRef
  • Enhancing plant immunity by expression of pathogen-targeted CRISPR-Cas9 in plants
    Hong Gil Lee, Duk Hyoung Kim, Yee-Ram Choi, Jihyeon Yu, Sung-Ah Hong, Pil Joon Seo, Sangsu Bae
    Gene and Genome Editing.2021; 1: 100001.     CrossRef
  • Fruit crops in the era of genome editing: closing the regulatory gap
    Derry Alvarez, Pedro Cerda-Bennasser, Evan Stowe, Fabiola Ramirez-Torres, Teresa Capell, Amit Dhingra, Paul Christou
    Plant Cell Reports.2021; 40(6): 915.     CrossRef
  • Nanoscale Drug Delivery Systems: From Medicine to Agriculture
    Pablo Vega-Vásquez, Nathan S. Mosier, Joseph Irudayaraj
    Frontiers in Bioengineering and Biotechnology.2020;[Epub]     CrossRef
  • Facilitated adaptation for conservation – Can gene editing save Hawaii's endangered birds from climate driven avian malaria?
    Michael D. Samuel, Wei Liao, Carter T. Atkinson, Dennis A. LaPointe
    Biological Conservation.2020; 241: 108390.     CrossRef
  • Antinutrients in Plant-based Foods: A Review
    Aneta Popova, Dasha Mihaylova
    The Open Biotechnology Journal.2019; 13(1): 68.     CrossRef
  • Effect of phosphate nutrition on growth, physiology and phosphate transporter expression of cucumber seedlings
    Zakira Naureen, Arjun Sham, Hibatullah Al Ashram, Syed A. Gilani, Salma Al Gheilani, Fazal Mabood, Javid Hussain, Ahmed Al Harrasi, Synan F. AbuQamar
    Plant Physiology and Biochemistry.2018; 127: 211.     CrossRef
  • A simple, flexible and high‐throughput cloning system for plant genome editing via CRISPR‐Cas system
    Hyeran Kim, Sang‐Tae Kim, Jahee Ryu, Min Kyung Choi, Jiyeon Kweon, Beum‐Chang Kang, Hyo‐Min Ahn, Suji Bae, Jungeun Kim, Jin‐Soo Kim, Sang‐Gyu Kim
    Journal of Integrative Plant Biology.2016; 58(8): 705.     CrossRef
  • Is there a future for genome-editing technologies in conservation?
    J. A. Johnson, R. Altwegg, D. M. Evans, J. G. Ewen, I. J. Gordon, N. Pettorelli, J. K. Young
    Animal Conservation.2016; 19(2): 97.     CrossRef
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High-Throughput Phenotyping Platforms for Transgenic Plants in the Research and Product Development
Dong Yul Sung
Plant Breed. Biotech. 2015;3(4):291-298.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.291

The world population is projected to reach to 9.7 billion people by 2050. With increasing population and improving living standards, the demand for food is accelerating. In order to meet increasing demand for food while arable land and other resources are decreasing, agriculture needs all the tools available to sustainably increase crop yields. Development of effective genetically modified (GM) traits to protect crops from abiotic and biotic stressors is a critical aspect of sustainable yield improvement. Efficient identification of traits and rapid integration of the traits into commercial elite germplasm requires robust and rapid trait testing. Monsanto has developed numerous high-throughput phenotyping platforms to support rapid trait identification and integration. Selected phenotyping platforms will be reviewed to gain understanding of how they are utilized for trait phenotyping.

Citations

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  • Optimization Study of RGB Image-based Apple Fruit Measurement for Digital Breeding
    Jae Il Lyu, Chaewon Lee, Seo Yeon Lee, Younguk Kim, Nyunhee Kim, Ji Seon Song, JeongHo Baek, Jung Gun Cho, Kyung-Hwan Kim
    Korean Journal of Breeding Science.2023; 55(4): 303.     CrossRef
  • Breeding next generation tree fruits: technical and legal challenges
    Lorenza Dalla Costa, Mickael Malnoy, Ivana Gribaudo
    Horticulture Research.2017;[Epub]     CrossRef
  • 45 View
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  • 2 Crossref
Phenotyping of Plants for Drought and Salt Tolerance Using Infra-Red Thermography
Taek-ryoun Kwon, Kyung-hwan Kim, Hae-Jin Yoon, Seung-kon Lee, Beom-ki Kim, Zamin Shaheed Siddiqui
Plant Breed. Biotech. 2015;3(4):299-307.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.299

Drought and salinity are the major environmental constrains in global agricultural production. Plant breeding for the drought and salt tolerance needs a proper assessment procedure to overcome stress constrain. Fundamental understanding on the physiological nature of the plant tolerance provides valuable information for the genetically modified crop’s development. Drought or salt stress induces several common physiological responses in plants such as water relation and photosynthetic capacitiy. It is because both stresses lead cellular dehydration in the plants, particularly, during the early phase of stress imposition. Drought and salinity decrease CO2 availability for photosynthesis via stomatal limitation as well as elevate leaf temperature due to partially closed stomata. In this scenario, stomatal regulation and plant water status are important aspects in abiotic stress environment. These physiological responses have a function to stabilize the temperature inside plant/leaf. Therefore phenotyping through an infra-red thermography (heat sensitive sensor), could be a useful tool in the selection of a tolerant genotypes. Infra-red thermography is a part of the electromagnetic spectrum which emits a certain amount of radiation as a function of their temperatures. In general, the plants which have less water, would have higher temperature and display more infra-red radiations. In abiotic stresses such as drought and salinity, plant water status is affected and varied from the sensitive to tolerant level. Infra-red images of plants are often linked with some of the physiological attributes to the tolerance. This review covers the limits, advantages, linkages, comparison and other prospectives of using thermal imagaes in modern phenotyping techniques.

Citations

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  • Artificial Intelligence (AI) in Detection of Abiotic Stress in Plants: A Review
    Anushree Matabber, Lionel Lami-Ndame Rhuhanga, Shinsuke Agehara, Maryam Mozafarian
    Sensors.2026; 26(4): 1122.     CrossRef
  • High throughput phenomics in elucidating drought stress responses in rice (Oryza sativa L.)
    S. Anand, R. L. Visakh, R. Nalishma, R. P. Sah, R. Beena
    Journal of Plant Biochemistry and Biotechnology.2025; 34(1): 119.     CrossRef
  • Functional phenotyping: Understanding the dynamic response of plants to drought stress
    Sheikh Mansoor, Yong Suk Chung
    Current Plant Biology.2024; 38: 100331.     CrossRef
  • Water and Nutrient Recovery for Cucumber Hydroponic Cultivation in Simultaneous Biological Treatment of Urine and Grey Water
    Anna Wdowikowska, Małgorzata Reda, Katarzyna Kabała, Piotr Chohura, Anna Jurga, Kamil Janiak, Małgorzata Janicka
    Plants.2023; 12(6): 1286.     CrossRef
  • Field identification of drought tolerant wheat genotypes using canopy vegetation indices instead of plant physiological and biochemical traits
    Pengfei Wen, Yu Meng, Chenkai Gao, Xiaokang Guan, TongChao Wang, Wei Feng
    Ecological Indicators.2023; 154: 110781.     CrossRef
  • Improving Drought Tolerance in Mungbean (Vigna radiata L. Wilczek): Morpho-Physiological, Biochemical and Molecular Perspectives
    Chandra Mohan Singh, Poornima Singh, Chandrakant Tiwari, Shalini Purwar, Mukul Kumar, Aditya Pratap, Smita Singh, Vishal Chugh, Awdhesh Kumar Mishra
    Agronomy.2021; 11(8): 1534.     CrossRef
  • Sustainable effect of a symbiotic nitrogen‐fixing bacterium Sinorhizobium meliloti on nodulation and photosynthetic traits of four leguminous plants under low moisture stress environment
    Z.S. Siddiqui, F. Ali, Z. Uddin
    Letters in Applied Microbiology.2021; 72(6): 714.     CrossRef
  • High-throughput phenotyping platform for analyzing drought tolerance in rice
    Song Lim Kim, Nyunhee Kim, Hongseok Lee, Eungyeong Lee, Kyeong-Seong Cheon, Minsu Kim, JeongHo Baek, Inchan Choi, Hyeonso Ji, In Sun Yoon, Ki-Hong Jung, Taek-Ryoun Kwon, Kyung-Hwan Kim
    Planta.2020;[Epub]     CrossRef
  • Thermal Imaging for Plant Stress Detection and Phenotyping
    Mónica Pineda, Matilde Barón, María-Luisa Pérez-Bueno
    Remote Sensing.2020; 13(1): 68.     CrossRef
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Molecular Markers for Selecting Diverse Disease Resistances in Tomato Breeding Programs
Je Min Lee, Chang-Sik Oh, Inhwa Yeam
Plant Breed. Biotech. 2015;3(4):308-322.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.308

Tomato (Solanum lycopersicum L.) is an economically important crop worldwide. In addition, tomato serves as an excellent model system for plant genetics and biology, including fruit biology, abiotic stress tolerance, and plant-microbe interactions. Development and practical use of molecular markers have been actively pursued in molecular breeding programs for tomato, especially for disease resistance to allow selection of a single resistance gene and combination of multiple resistance genes. Due to insufficient genetic variation in cultivated tomatoes, various wild relatives of tomato have been investigated and utilized as disease resistance sources. In order to pursue the resistance provided by these wild relatives in developing new tomato varieties, molecular markers have been developed and intensively utilized in tomato breeding programs. In this review, we summarize the currently available molecular markers that confer resistance against major tomato diseases, including Tomato yellow leaf curl virus (TYLCV), Tomato spotted wilt virus (TSWV), Tomato mosaic virus (ToMV), verticillium wilt, fusarium wilt, late blight caused by Phytophthora infestans, leaf mold caused by Cladosporium fulvum, root-knot caused by Meloidogyne spp., bacterial spot caused by Xanthomonas spp., and bacterial speck caused by Pseudomonas syringae. The provided marker information is expected to contribute to development of marker-assisted selection for disease resistance and to exploration of novel genetic sources for a tomato breeding program.

Citations

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  • From Genetic Diversity to Genetic Gain: Molecular Approaches and Breeding Strategies in Tomato with Insights from Lithuanian Germplasm
    Audrius Radzevičius, Danguolė Juškevičienė, Jonas Viškelis, Rasa Karklelienė
    International Journal of Molecular Sciences.2026; 27(12): 5433.     CrossRef
  • Molecular screening of wild and cultivated tomato germplasm reveals potential materials for multi-locus disease resistance breeding
    Ehtisham Hussain, Chien-yu Cheng, I-min Huang, Chen-yu Lin, Samrin Gul, Ijaz Rasool Noorka, Assaf Eybishitz, Chutchamas Kanchana-udomkan, Maarten van Zonneveld, Ya-ping Lin
    Genetic Resources and Crop Evolution.2025; 72(7): 8619.     CrossRef
  • An advanced 10K SNP panel for genotyping tomato (Solanum lycopersicum L.) via targeted genome sequencing
    Yawo Mawunyo Nevame Adedze, Yanfen Xu, Song Liu, Yaran Zhao, Changjuan Mo, Renxu Zhang, Jiahui Dong, Haofa Lan, Jingjing Huang, Xingming Chen, Xuefei Gao, Qingzhen Yin, Jianan Zhang
    Frontiers in Plant Science.2025;[Epub]     CrossRef
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    Luyao Yang, Jie Ren, Huanhuan Yang, Tao Zhou, Wencai Yang
    Molecular Breeding.2025;[Epub]     CrossRef
  • Use of molecular markers associated with resistance to biotic and abiotic environmental factors in developing breeding material for tomato and pepper in Belarus
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    Vegetable crops of Russia.2025; (1): 5.     CrossRef
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    Ga Hui Kang, Beum-Chang Kang, Jeung-Sul Han, Je Min Lee
    Horticulture, Environment, and Biotechnology.2024; 65(1): 131.     CrossRef
  • A search for tomato disease resistance genes using molecular markers to create new genotypes
    I. N. Shamshin, A. S. Ilyichev, M. G. Fomicheva, E. V. Grosheva
    Plant Biotechnology and Breeding.2024; 7(3): 19.     CrossRef
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    Gülbanu KIYMACI, Ayşe Özgür UNCU, Önder TÜRKMEN
    Akademik Ziraat Dergisi.2023; 12(2): 177.     CrossRef
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    Silvia Farinati, Angelo Betto, Fabio Palumbo, Francesco Scariolo, Alessandro Vannozzi, Gianni Barcaccia
    Horticulturae.2022; 8(9): 761.     CrossRef
  • Germplasm Screening Using DNA Markers and Genome-Wide Association Study for the Identification of Powdery Mildew Resistance Loci in Tomato
    Jiyeon Park, Siyoung Lee, Yunseo Choi, Girim Park, Seoyeon Park, Byoungil Je, Younghoon Park
    International Journal of Molecular Sciences.2022; 23(21): 13610.     CrossRef
  • QTL-Seq Analysis for Identification of Resistance Loci to Bacterial Canker in Tomato
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    Frontiers in Plant Science.2022;[Epub]     CrossRef
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    Horticultural Science and Technology.2021; 39(3): 402.     CrossRef
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    Plant Breeding.2021; 140(2): 342.     CrossRef
  • Characterization of tomato accessions for morphological, agronomic, fruit quality, and virus resistance traits
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    Ivan Simko, Mengyuan Jia, Jelli Venkatesh, Byoung-Cheorl Kang, Yiqun Weng, Gianni Barcaccia, Sergio Lanteri, Gehendra Bhattarai, Majid R. Foolad
    Critical Reviews in Plant Sciences.2021; 40(4): 303.     CrossRef
  • ASSESSMENT AND APPLICATION OF MOLECULAR MARKERS IN BREEDING FOR THE RESISTANCE OF TOMATO (SOLANUM LYCOPERSICUM L.) TO LATE BLIGHT (PHYTOPHTHORA INFESTANS)
    O. G. Babak, E. V. Drozd, N. A. Nekrashevich, N. V. Anisimova, K. K. Yatsevich, I. E. Bayeva, A. V. Frantsuzionak, I. G. Pugachova, M. M. Dobrodkin, A. V. Kilchevsky
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    Jiyeon Park, Seungahn Kwon, Girim Park, Siyoung Lee, Byoung Il Je, Younghoon Park
    Molecular Breeding.2020;[Epub]     CrossRef
  • Exploring the efficacy of antagonistic rhizobacteria as native biocontrol agents against tomato plant diseases
    S. Karthika, Sherin Varghese, M. S. Jisha
    3 Biotech.2020;[Epub]     CrossRef
  • Combination of newly developed SNP and InDel markers for genotyping the Cf-9 locus conferring disease resistance to leaf mold disease in the tomato
    Boyoung Kim, In Sun Hwang, Hyung-Jin Lee, Chang-Sik Oh
    Molecular Breeding.2017;[Epub]     CrossRef
  • Current advances and prospectus of viral resistance in horticultural crops
    Inhwa Yeam
    Horticulture, Environment, and Biotechnology.2016; 57(2): 113.     CrossRef
  • Origin of the plant Tm-1-like gene via two independent horizontal transfer events and one gene fusion event
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    Scientific Reports.2016;[Epub]     CrossRef
  • Comparative study of effect of TYLCV and Septoria blight on F3 tomato lines
    Mehboob Ahmad, Zishan Gul, Mazhar Iqbal
    International Journal of Biosciences (IJB).2016; : 229.     CrossRef
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Current Status of Knowledge and Research Perspectives in Korean Pear Genomics
Youngjae Oh, Yoon-Kyeong Kim, Daeil Kim
Plant Breed. Biotech. 2015;3(4):323-332.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.323

The pear (Pyrus spp.) is most important fruit crop in the world. The genus Pyrus belongs to the subfamily Maloideae in the Rosaceae family and contains at least 22 primary species; however, only a few species, including P. pyrifolia, P. ussuriensis, P. bretschneideri, and P. communis have been utilized for fruit production. In Korea, awareness of the importance of the fruit industry and fruit tree breeding is low, and there is little support for genetic and genomic studies of fruit trees. In foreign countries, studies have focused on obtaining genomic information of fruit crops and the development of important agronomic trait-related molecular markers, providing a genomic framework for fruit tree breeding. Although Korea does not actively participate in research on the genomics of fruit trees, it is not far behind other countries in terms of technology and is therefore still competitive in research and development. The resequencing of ‘Whangkeumbae’ and ‘Minibae’ pears has been performed using the Illumina Hiseq 2000 platform as a part of the Biogreen 21 project, offering novel, rapid methods for identification of molecular marker, such as single nucleotide polymorphisms, insertion-deletions, and simple sequence repeats, through next-generation sequencing (NGS) technology. These NGS-based molecular markers are useful for genetic studies of Asian pears, e.g., for construction of genetic linkage maps, mapping of quantitative trait loci, and marker-assisted selection.

Citations

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  • Fruit Cracking in Pears: Its Cause and Management—A Review
    Ho-Jin Seo, Shailesh S. Sawant, Janghoon Song
    Agronomy.2022; 12(10): 2437.     CrossRef
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Research Articles
Development of Resistant Gene-Pyramided Japonica Rice for Multiple Biotic Stresses Using Molecular Marker-Assisted Selection
Jung-Pil Suh, Young-Chan Cho, Yong-Jae Won, Eok-Keun Ahn, Man-Kee Baek, Myeong-Ki Kim, Bo-Kyeong Kim, Kshirod K. Jena
Plant Breed. Biotech. 2015;3(4):333-345.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.333

Advances in plant molecular techniques have dramatically widened the applicability of gene identification and pyramiding valuable genes. This study was carried out to pyramid five resistance genes for biotic stress into the japonica rice cultivar using marker-assisted selection (MAS) and marker-assisted background analysis of selected progenies using SSR markers. The Pi40, Xa4, xa5, Xa21 and Bph18 genes were combined in Jinbubyeo, a Korean japonica rice variety using MAS. Gene specific co-dominant PCR-based markers were used to select for homozygous recombinant lines in a segregating population derived from a cross between the parental homozygous resistant gene introgression lines. We had successfully developed multiple gene pyramided breeding lines (GPLs) for bacterial blight, blast, and brown planthopper using MAS in rice. The GPLs exhibited high resistance against biotic stress and had around 93% of the genetic background of the recurrent parent Jinbubyeo based on SSR graphical mapping. The yield and agronomic traits of the GPLs were similar to those of the recurrent parent, indicating that there is no apparent agronomic trait penalty associated with the presence of the resistance genes. The strategy of simultaneous foreground and phenotypic selection to introduce multiple R genes is very useful to reduce the cost and the time required for the isolation of desirable recombinants with target resistance genes in rice. The GPLs could be useful to enhance effective resistance for biotic stress and produce stable grain yield in japonica rice breeding programs.

Citations

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  • Genetic Dissection of Resistance to Pseudomonas amygdali pv. tabaci in Soybean [Glycine max (L.) Merr.] by Linkage Analysis
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    Myrish Alvarez Pacleb, Seongkyeong Lee, Sherry Lou Hechanova, Thelma Padolina, Lenie Pautin, Jesson Del-Amen, Dong-Soo Park, Il-Ryong Choi, Sung-Ryul Kim, Dongjin Shin, Jung-Pil Suh
    Agronomy.2025; 15(11): 2585.     CrossRef
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    Shamshad Alam, Krishna Tesman Sundaram, Uma Maheshwar Singh, Madamshetty Srinivas Prasad, Gouri Sankar Laha, Pallavi Sinha, Vikas Kumar Singh
    Frontiers in Plant Science.2024;[Epub]     CrossRef
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    Isnaini Isnaini, Yudhistira Nugraha, Niranjan Baisakh, Nono Carsono
    Sustainability.2023; 15(19): 14253.     CrossRef
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    Breeding Science.2023; 73(1): 86.     CrossRef
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    Frontiers in Plant Science.2023;[Epub]     CrossRef
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  • Pyramiding of Four Broad Spectrum Bacterial Blight Resistance Genes in Cross Breeds of Basmati Rice
    Irfan Ullah, Hamid Ali, Tariq Mahmood, Mudassar Nawaz Khan, Muhammad Haris, Hussain Shah, Adil Mihoub, Aftab Jamal, Muhammad Farhan Saeed, Roberto Mancinelli, Emanuele Radicetti
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    Chang-Min Lee, Jung-Pil Suh, Hyun-Su Park, Man-Kee Baek, O-Young Jeong, Song-Joong Yun, Young-Chan Cho, Suk-Man Kim
    Rice.2021;[Epub]     CrossRef
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    Swapnil Ravindra Kulkarni, S. M. Balachandran, K. Ulaganathan, Divya Balakrishnan, A. S. Hari Prasad, G. Rekha, M. B. V. N. Kousik, S. K. Hajira, Ravindra Ramarao Kale, D. Aleena, M. Anila, E. Punniakoti, T. Dilip, K. Pranathi, M. Ayyappa Das, Mastanbee S
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  • Recent Advances in Rice Varietal Development for Durable Resistance to Biotic and Abiotic Stresses through Marker-Assisted Gene Pyramiding
    Md Azadul Haque, Mohd Y. Rafii, Martini Mohammad Yusoff, Nusaibah Syd Ali, Oladosu Yusuff, Debi Rani Datta, Mohammad Anisuzzaman, Mohammad Ferdous Ikbal
    Sustainability.2021; 13(19): 10806.     CrossRef
  • Effect of Resistance Genes on the Occurrence of Rice Undesirable Characters in a Wide Cross
    Chang-Min Lee, Hyun-Su Park, Man-Kee Baek, Jung-Pil Suh, O-Young Jeong, Song-Joong Yun, Suk-Man Kim
    Korean Journal of Breeding Science.2021; 53(4): 392.     CrossRef
  • Molecular mapping of QTLs for yield related traits in recombinant inbred line (RIL) population derived from the popular rice hybrid KRH-2 and their validation through SNP genotyping
    Swapnil Ravindra Kulkarni, S. M. Balachandran, K. Ulaganathan, Divya Balakrishnan, M. Praveen, A. S. Hari Prasad, R. A. Fiyaz, P. Senguttuvel, Pragya Sinha, Ravindra R. Kale, G. Rekha, M. B. V. N. Kousik, G. Harika, M. Anila, E. Punniakoti, T. Dilip, S. K
    Scientific Reports.2020;[Epub]     CrossRef
  • Impact of Marker Assisted Breeding for Bacterial Blight Resistance in Rice: A Review
    Hari Kesh, Prashant Kaushik
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    Yang Li, Yi Mo, Zhihua Li, Meng Yang, Lihua Tang, Ling Cheng, Yongfu Qiu
    Theoretical and Applied Genetics.2020; 133(2): 579.     CrossRef
  • Marker Assisted Forward Breeding to Combine Multiple Biotic-Abiotic Stress Resistance/Tolerance in Rice
    Shilpi Dixit, Uma Maheshwar Singh, Arun Kumar Singh, Shamshad Alam, Challa Venkateshwarlu, Vishnu Varthini Nachimuthu, Shailesh Yadav, Ragavendran Abbai, Ramchander Selvaraj, M. Nagamallika Devi, Perumalla Janaki Ramayya, Jyothi Badri, T. Ram, Jhansi Laks
    Rice.2020;[Epub]     CrossRef
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    Gayatri Gouda, Manoj Kumar Gupta, Ravindra Donde, Trilochan Mohapatra, Ramakrishna Vadde, Lambodar Behera
    Physiology and Molecular Biology of Plants.2020; 26(5): 885.     CrossRef
  • Pyramiding Xa21, Bph14, and Bph15 genes into the elite restorer line Yuehui9113 increases resistance to bacterial blight and the brown planthopper in rice
    Chao He, Youlun Xiao, Jianghui Yu, Jinjiang Li, Qiucheng Meng, Xianguo Qing, Guoying Xiao
    Crop Protection.2019; 115: 31.     CrossRef
  • Breeding Hybrid Rice with Genes Resistant to Diseases and Insects Using Marker-Assisted Selection and Evaluation of Biological Assay
    Me-Sun Kim, Sothea Ouk, Kuk-Hyun Jung, Yoohan Song, Le Van Trang, Ju-Young Yang, Yong-Gu Cho
    Plant Breeding and Biotechnology.2019; 7(3): 272.     CrossRef
  • Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking
    Gitishree Das, Jayanta Kumar Patra, Kwang-Hyun Baek
    Frontiers in Plant Science.2017;[Epub]     CrossRef
  • Rational design of high-yield and superior-quality rice
    Dali Zeng, Zhixi Tian, Yuchun Rao, Guojun Dong, Yaolong Yang, Lichao Huang, Yujia Leng, Jie Xu, Chuan Sun, Guangheng Zhang, Jiang Hu, Li Zhu, Zhenyu Gao, Xingming Hu, Longbiao Guo, Guosheng Xiong, Yonghong Wang, Jiayang Li, Qian Qian
    Nature Plants.2017;[Epub]     CrossRef
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Reaction of Soybean Cyst Nematode Resistant Plant Introductions to Root-Knot and Reniform Nematodes
Jeong-Dong Lee, Hyun-Jee Kim, Robert T. Robbins, James A. Wrather, Jason Bond, Henry T. Nguyen, J. Grover Shannon
Plant Breed. Biotech. 2015;3(4):346-354.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.346

Soybean cyst [SCN, Heterodera glycines Ichinohe], southern root-knot [RKN, Meloidogyne incognita (Kofoid and White) Chitwood] and reniform nematodes [RN, Rotylenchlus reniformis (Linford and Oliveria)] are common plant-parasitic nematode species in southern US fields. Each nematode individually or collectively causes significant economic losses to field grown soybean. A subset of 120 soybean plant introductions (PIs) selected from the USDA Soybean Germplasm Collection have been shown to be resistant to one or more SCN populations (HG Types); however, many of these PIs have not been screened for resistance to either RKN or RN. The
objective
of this research was to evaluate these germplasm accessions for resistance to RKN and RN. The evaluation for RKN resistance was conducted in RKN infested field plantings after potatoes near Charleston, MO in 2006 and 2007. The evaluation for RN resistance was performed in a greenhouse at Fayetteville, AR, in 2007. Out of these accessions, 64 PIs were identified with high or moderate resistance to RKN. Of these 64 lines, 24 accessions showed good resistance to both RKN and RN. These new sources of resistance to multiple nematodes will be valuable materials for soybean breeding programs to develop new resistant cultivars that can overcome yield losses caused by one or more of these nematode species.

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  • Development of SNP molecular markers associated with resistance to reniform nematode in soybean using KASP genotyping
    Juliet E. Wilkes, Benjamin Fallen, Chris Saski, Paula Agudelo
    Euphytica.2023;[Epub]     CrossRef
  • Registration of ‘S16‐11644C’: A maturity group IV soybean cultivar with high‐yielding performance and broad disease resistance
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    Revista de Ciências Agroveterinárias.2023; 22(3): 509.     CrossRef
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    Feng Lin, Sushil Satish Chhapekar, Caio Canella Vieira, Marcos Paulo Da Silva, Alejandro Rojas, Dongho Lee, Nianxi Liu, Esteban Mariano Pardo, Yi-Chen Lee, Zhimin Dong, Jose Baldin Pinheiro, Leonardo Daniel Ploper, John Rupe, Pengyin Chen, Dechun Wang, He
    Theoretical and Applied Genetics.2022; 135(11): 3773.     CrossRef
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    P. Chen, G. Shannon, A. Scaboo, M. Crisel, S. Smothers, M. Clubb, S. Selves, C. C. Vieira, M. L. Ali, D. Lee, N. Lord, H. T. Nguyen, Z. Li, M. G. Mitchum, J. Bond, C. Meinhardt, M. Usovsky, S. Li, A. Mengistu, B. Zhang, L. Mozzoni, R. T. Robbins
    Journal of Plant Registrations.2022; 16(2): 287.     CrossRef
  • Classification Methods and Identification of Reniform Nematode Resistance in Known Soybean Cyst Nematode-Resistant Soybean Genotypes
    Mariola Usovsky, Robert T. Robbins, Juliet Fultz Wilkes, Devany Crippen, Vijay Shankar, Tri D. Vuong, Paula Agudelo, Henry T. Nguyen
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  • Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean
    Jean Carlos Alekcevetch, André Luiz de Lima Passianotto, Everton Geraldo Capote Ferreira, Adriana Brombini dos Santos, Danielle Cristina Gregório da Silva, Waldir Pereira Dias, François Belzile, Ricardo Vilela Abdelnoor, Francismar Correa Marcelino-Guimar
    Theoretical and Applied Genetics.2021; 134(3): 777.     CrossRef
  • Evaluation of Soybean Germplasm for Resistance to Multiple Nematode Species: Heterodera glycines, Meloidogyne incognita, and Rotylenchulus reniformis
    Mariola Klepadlo, Clinton G. Meinhardt, Tri D. Vuong, Gunvant Patil, Nicole Bachleda, Heng Ye, Robert T. Robbins, Zenglu Li, J. Grover Shannon, Pengyin Chen, Khalid Meksem, Henry T. Nguyen
    Crop Science.2018; 58(6): 2511.     CrossRef
  • Quantitative trait loci mapping of Meloidogyne incognita and M. hapla resistance in a recombinant inbred line population of soybean
    Chunjie Li, Jialin Wang, Jia You, Xinpeng Wang, Baohui Liu, Jun Abe, Fanjiang Kong, Congli Wang
    Nematology.2018; 20(6): 525.     CrossRef
  • Advancements in breeding, genetics, and genomics for resistance to three nematode species in soybean
    Ki-Seung Kim, Tri D. Vuong, Dan Qiu, Robert T. Robbins, J. Grover Shannon, Zenglu Li, Henry T. Nguyen
    Theoretical and Applied Genetics.2016; 129(12): 2295.     CrossRef
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Enhancement of Rice Resistance to Bacterial Blight by Overexpressing BrCP3 Gene of Brassica rapa
Marjohn C. Niño, Hye Jung Lee, Joonki Kim, Sailila E. Abdula, Yu-Jin Jung, Kwon-Kyoo Kang, Illsup Nou, Yong-Gu Cho
Plant Breed. Biotech. 2015;3(4):355-365.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.355

Brassica rapa cysteine protease 3 (BrCP3) is an endopeptidase member of C1A family (papain-like) and CA clan of cysteine protease. Members of papain-like cysteine protease (CP) have emerged to be key enzymes involved in cell death in response to biotic and environmental stresses. Recent progress of CP research features its diverse and overlapping role in basal and effector-triggered immunity. This study was carried out to characterize BrCP3 gene in Chinese cabbage and explore its function in rice – Xanthomonas oryzae pv. oryzae pathosystem. Phylogenetic analysis and BLASTP search of its amino acid sequence to the Arabidopsis Protein TAIR 10 database identified BrCP3 as the closest ortholog of Arabidopsis RD21a. The full-length cDNA of BrCP3 was cloned and transformed into the genome of japonica rice cv. ‘Gopum’. Constitutive overexpression of the transgene is driven by Ubi-1 promoter in pFLCIII vector. Regenerated single copy overexpression rice lines were inoculated with three Xoo Korean isolates. Regulation of rice resistance through cysteine protease activity is evident in the overexpression lines which showed enhanced immunity to three isolates as depicted by reduced lesion length compared with the wild type. Our initial results implicate an interesting biological function of BrCP3 in rice system that has never been reported before.

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  • Development of Transgenic Brassica Crops against Biotic Stresses Caused by Pathogens and Arthropod Pests
    Jorge Poveda, Marta Francisco, M. Elena Cartea, Pablo Velasco
    Plants.2020; 9(12): 1664.     CrossRef
  • Overexpression of rice premnaspirodiene oxygenase reduces the infection rate ofXanthomonas oryzaepv.oryzae
    Marjohn C. Niño, Jae-Young Song, Franz Marielle Nogoy, Me-Sun Kim, Yu Jin Jung, Kwon-Kyoo Kang, Illsup Nou, Yong-Gu Cho
    Journal of Plant Biotechnology.2016; 43(4): 422.     CrossRef
  • Application and utilization of marker assisted selection for biotic stress resistance in hybrid rice (Oryza sativaL.)
    Jae-Young Song, Sothea Ouk, Franz Marielle Nogoy, Marjohn C. Niño, Soon Wook Kwon, Woongoo Ha, Kwon-Kyoo Kang, Yong-Gu Cho
    Journal of Plant Biotechnology.2016; 43(3): 317.     CrossRef
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Genetic Mapping of a Rice Loose Upper Panicle Mutant
Abebe Megersa, Dongryung Lee, Jonghwa Park, Hee-Jong Koh
Plant Breed. Biotech. 2015;3(4):366-375.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.366

We identified a loose upper panicle mutant (lup) from a japonica-type rice variety, Hwacheongbyeo, treated by Ethyl Methane Sulfonate (EMS). The lup mutant displayed an increased distance between spikelets particularly in the first primary branches, and the number of spikelet was reduced. In addition, aborted spikelets in the tip of first primary branches were observed. Besides these morphological changes in the panicle, the lup mutant also displayed overall reduction in culm length, panicle length, grain weight, and tiller number. On the contrary, the chlorophyll content was relatively high in lup mutant in comparison to wild-type plants, and displayed a “stay-green” phenotype even after physiological maturity. Genetic analysis (using F2 population of lup/M.23) revealed that a single recessive gene is involved in the above-mentioned morphological changes in the lup mutant. A candidate genomic region was fine-mapped at an interval of 1.04 Mb flanked by two molecular markers, 18170 and D0052, on the long arm of chromosome 8. In this region, we found a total of 348 mutation points using a slightly modified MutMap method. Based on these results, we expect the candidate genomic region containing a putative LUP gene will provide an important clue in developmental regulation of spikelets and panicle in rice.

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    Ecological Genetics and Genomics.2022; 23: 100115.     CrossRef
  • MutMap Approach Enables Rapid Identification of Candidate Genes and Development of Markers Associated With Early Flowering and Enhanced Seed Size in Chickpea (Cicer arietinum L.)
    Praveen Kumar Manchikatla, Danamma Kalavikatte, Bingi Pujari Mallikarjuna, Ramesh Palakurthi, Aamir W. Khan, Uday Chand Jha, Prasad Bajaj, Prashant Singam, Annapurna Chitikineni, Rajeev K. Varshney, Mahendar Thudi
    Frontiers in Plant Science.2021;[Epub]     CrossRef
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    Mohammed Abdullah Abdulraheem Ghaleb, Cong Li, Muhammad Qasim Shahid, Hang Yu, Junhong Liang, Ruoxin Chen, Jinwen Wu, Xiangdong Liu
    BMC Plant Biology.2020;[Epub]     CrossRef
  • Whole Genome Resequencing from Bulked Populations as a Rapid QTL and Gene Identification Method in Rice
    Workie Anley Zegeye, Yingxin Zhang, Liyong Cao, Shihua Cheng
    International Journal of Molecular Sciences.2018; 19(12): 4000.     CrossRef
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Overexpression of BrTSR53 Gene Improves Tolerance of Rice Plant to Salt Stress
A-Ram Kim, Hyemin Lim, Jung-Il Cho, Chang-Kug Kim, Seung Uk Ji, Soo-Chul Park, Gang-Seob Lee
Plant Breed. Biotech. 2015;3(4):376-383.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.376

Plant is frequently exposed to various abiotic stress. Salt stress is particularly an important abiotic stress that seriously affects plant growth and development. BrTSR53 gene, a putative stress-related gene isolated from Brassica rapa, was used to generate overexpression transgenic rice. The over-expression of BrTSR53 in BrTSR53-OX transgenic rice was confirmed by quantitative RT-PCR and western blot analysis. To elucidate the role of BrTSR53 in stress tolerance, responses of BrTSR53-OX transgenic rice plants to salt stress conditions were examined. BrTSR53-OX #12, #28, and #32 lines were treated with salt stress on MS medium containing 100 mM or 200 mM of NaCl for 5 and 14 days. Morphological analysis revealed differences between the three transgenic BrTSR53-OX rice and the wild-type rice. The germination rates of the three transgenic BrTSR53-OX lines of rice were significantly higher than that of the wild type rice, indicating that they were more tolerant to 200 mM NaCl than the wild type rice. In addition, the three transgenic BrTSR53-OX rice lines had significantly longer length of root and shoot compared to the wild type rice. These results suggest that the BrTSR53 gene played an important role in the tolerance of rice to salt stress. Therefore, it might be a potential target for the purpose of improving salt tolerance of rice and other crops.

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  • In vitro selection for drought and salt stress tolerance in rice: an overview
    Monika Sahu, Shrinkhla Maurya, Zenu Jha
    Plant Physiology Reports.2023; 28(1): 8.     CrossRef
  • Gene duplication and stress genomics in Brassicas: Current understanding and future prospects
    Shayani Das Laha, Smritikana Dutta, Anton R. Schäffner, Malay Das
    Journal of Plant Physiology.2020; 255: 153293.     CrossRef
  • A Novel Variation in the FRIZZLE PANICLE (FZP) Gene Promoter Improves Grain Number and Yield in Rice
    Sheng-Shan Wang, Chia-Lin Chung, Kai-Yi Chen, Rong-Kuen Chen
    Genetics.2020; 215(1): 243.     CrossRef
  • Cloning and heterologous expression of Os-AP2/ERF-N22 drought inducible rice transcription factor in E. coli
    VAIBHAV KUMAR, KISHWAR ALI, AMRESH KUMAR, KALPANA TEWARI, NITIN KUMAR GARG, SUSHIL S CHANGAN, ARUNA TYAGI
    The Indian Journal of Agricultural Sciences.2018; 88(10): 1515.     CrossRef
  • National Program for Developing Biotech Crops in Korea
    Sung-Han Park, Jung-Il Cho, Youn-Shic Kim, Su-Min Kim, Su-Mi Lim, Gang-Seob Lee, Soo-Chul Park
    Plant Breeding and Biotechnology.2018; 6(3): 171.     CrossRef
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Effect of Proton Beam Irradiation on M1 Seeds and Seedling Growth in Rice
Joohyun Lee, A-Rim Lee, Soon-Wook Kwon
Plant Breed. Biotech. 2015;3(4):384-388.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.384

This study was carried out to evaluate effect of proton beam irradiation on M1 seed germination and seedling growth. For dosage effect, mature and healthy Supersami2 seeds were irradiated with 0, 204, 395, 502, and 700Gy. The traits for germination were not affected by dosage effect of proton beam irradiation. Germination rate evaluated at 7 days after imbibition ranged from 93.3% to 98.7%; germination vigor ranged from 59.3% to 68.7% where in the dose of 700Gy showed the lowest value of 59.3%. The average days of germination ranged from 1.36 to 1.48. The seedling growth was affected by the dosage. Withered rate (withered plants after germination) was increased as the dose increased. The withered rate of 53.9% was detected in 395Gy and no plant survived in 700Gy. In the ~400Gy treatment, the sensitivity of the traits of germination among Dianxi4, Jeogjinju, MS11(Maligaya Special 11), and Superjami2 was not different while the withered rate was different: 9.7% in MS11, 32.1% in Dianxi4, 53.9% in Superjami2, and 59.7% in Jeogjinju. Based on the germination rate and withered rate, it can be suggested that 350Gy to 450Gy is a starting point for applying proton beam irradiation to rice seed for mutation breeding.

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  • Characteristics and Research Status of Mutation Breeding Using Accelerator Beams
    Si-Yong Kang
    Korean Journal of Breeding Science.2023; 55(2): 110.     CrossRef
  • The effect of gamma radiation on the growth of black rice plants generation m1
    S Nurhidayah, E Firmansyah, S Rahayu
    IOP Conference Series: Earth and Environmental Science.2021; 672(1): 012011.     CrossRef
  • Mutation resource of Samba Mahsuri revealed the presence of high extent of variations among key traits for rice improvement
    Gopi Potupureddi, Vishalakshi Balija, Suneel Ballichatla, Gokulan C. G., Komal Awalellu, Swathi Lekkala, Karteek Jallipalli, Gayathri M. G., Ershad Mohammad, Milton M, Srikanth Arutla, Rajender Burka, Laha Gouri Shankar, Padmakumari Ayyangari Phani, Subba
    PLOS ONE.2021; 16(10): e0258816.     CrossRef
  • Impact of Proton Beam Irradiation on the Growth and Biochemical Indexes of Barley (Hordeum vulgare L.) Seedlings Grown under Salt Stress
    Lacramioara Oprica, Marius-Nicusor Grigore, Iulia Caraciuc, Daniela Gherghel, Cosmin-Teodor Mihai, Gabriela Vochita
    Plants.2020; 9(9): 1234.     CrossRef
  • Effects of proton beam irradiation on seed germination and growth of soybean (Glycine max L. Merr.)
    Juhyun Im, Woon Ji Kim, Sang Hun Kim, Bo-Keun Ha
    Journal of the Korean Physical Society.2017; 71(11): 752.     CrossRef
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Leaf Proteome Analysis in Brassica rapa L. (Inbred line ‘Chiifu’) using Shotgun Proteome Approach
Joohyun Lee
Plant Breed. Biotech. 2015;3(4):389-395.   Published online November 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.4.389

Through high throughput shotgun proteomics approach, the proteome of seedling leaf of Brassica rapa L. was identified. From three biological replications, a total of 2,122 non-redundant proteins of Brassica rapa L seedling leaf were identified, with a wide range and unbiased physiochemical properties. Their pI values ranged from pH 4.27 (Bra004590) to pH 11.81 (Bra013905). Their molecular weight (MW) ranged from 5.6 kDa (Bra006908) to 534.5 kDa (Bra028068). Gene ontology enrichment analysis revealed that these proteins were associated with cellular process, metabolic process, and enriched catalytic activity compared to whole brassica proteins. The highest presented protein in Brassica rapa seedling leaf was RuBisCO, accounting for 11.56% of total leaf proteins. Also, many ribosomal proteins were identified. The relative amount of all ribosomal proteins comprised 8.47% of total leaf proteins. The relative amount of two RuBisCO and ribosomal proteins was about 20% of total leaf proteins. Thus to detect proteins presenting low abundance, additional fractionating procedure to remove RuBisCO and ribosomal proteins is required.

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    Life.2020; 10(12): 311.     CrossRef
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