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Volume 10(2); June 2022

Review Article

Contribution of IR20 and IR64 in Developing Three Bangladeshi Popular Rice Cultivars
MM Emam Ahmed, Avijit Biswas, Sadia Afrin
Plant Breed. Biotech. 2022;10(2):81-93.   Published online June 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.2.81

Rice Breeding in Bangladesh started with establishment of Bangladesh Rice Research Institute (BRRI) in 1970. It aimed at developing modern rice cultivars to benefit farmers. Among BRRI developed varieties, BR11 is considered as most popular Transplanted Aman cultivar having high yield (6.0 t/ha), bold grain and high amylose content. On the other hand, BRRI dhan28 and BRRI dhan29 are most popular Boro rice varieties for Irrigated areas. Because, they produce high yield across diverse rice growing areas. BRRI dhan29 is widely grown in haors where rice is grown once in a year. BRRI dhan28 and BRRI dhan29 accounted for 50% of total Boro rice areas. As a whole, the popularity of the cultivars BR11, BRRI dhan28 and BRRI dhan29 influenced subsequent rice breeding trends and characteristics of new rice varieties. In this review, the pedigree information revealed that IR20 and IR5 acted as key foundation parents in developing the rice cultivar BR11 and BRRI dhan29. In contrast, same parental lineage of renowned IR64 contributed in developing BRRI dhan28. The breeding history, agronomic traits, grain quality and molecular characteristics of above cultivars have been discussed briefly. Thus, the background information generated from this review might help in developing breeding lines with higher genetic diversity, improved tolerance to biotic and abiotic stresses to obtain higher genetic gain from a breeding program. Furthermore, basic studies on these varieties and their important progenies might help to disclose the complex genetic control of yield as well as other qualitative traits prioritized by farmers and consumers.

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  • In vitro mutagenesis for the identification of blast-resistant rice (Oryza sativa L.) genotypes
    S. M. Abdullah Al Mamun, Md. Rezve, Mohammad Ashik Iqbal Khan, Md. Sarwar Jahan, Mst. Sabiha Sultana, Rahima Nusrat Remme, Sanjoy Kumar Adhikary, Md. Monirul Islam
    Plant Cell, Tissue and Organ Culture (PCTOC).2026;[Epub]     CrossRef
  • Optimizing Nitrogen Supply in IR64 Rice (Oryza Sativa L.) to Enhance Nitrogen Use Efficiency, Growth, Yield Potential, and Stress Response
    Bikash Kumar Kundu, Pubasri Chutia, Kunal Boro, Preetom Regon, Pankaj Borgohain, Arun Kumar Dutta, Niraj Agarwala, Bhaben Tanti
    Journal of Plant Growth Regulation.2026; 45(2): 1512.     CrossRef
  • Genotype Selection from Azide‐Induced Rice Mutants Using Multitrait Genotype–Ideotype Distance Index (MGIDI): Unveiling Promising Variants for Yield Improvement
    S. M. Abdullah Al Mamun, Nasrin Akter Ivy, Mohammad Ashik Iqbal Khan, Sayda Rehana, Mst. Sabiha Sultana, Sanjoy Kumar Adhikary, Md. Monirul Islam, Khaled Salem
    Advances in Agriculture.2024;[Epub]     CrossRef
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Research Articles
Colorimetric and Chlorophyll Fluorescence Assays for Fast Detection and Selection of Transgenic Events of Cotton, Cowpea, Soybean and Common Bean Expressing the Atahas Gene
Cristiane T. Citadin, Mirella P. Santos, Estela R. Andrade, Thaís M. Cipriano, Francisco J. L. Aragão
Plant Breed. Biotech. 2022;10(2):94-101.   Published online June 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.2.94

The detection of the presence and expression of transgenes in genetically modified plants is a key step in the process of selecting promising lines. We adapted two methods developed for detecting tolerance to the herbicide imazapyr for selection of transgenic lines expressing the mutated acetohydroxyacid synthase enzyme (AHAS) from Arabidopsis thaliana (Atahas gene). This was achieved using transgenic events from cotton, cowpea, soybean and common bean, which have previously been transformed to express the mutated Atahas gene. In the first method, a colorimetric assay was developed that detects acetoin, an intermediate in the biosynthetic pathway of branched chain amino acids, which is accumulated in the presence of cyclopropanedicarboxylic acid (CPCA), an inhibitor of ketoacid reductoisomerase (KARI). In the presence of the herbicide, it was possible to distinguish non-transgenic from transgenic plants. Qualitative analysis of acetoin formed during the AHAS inhibition allowed to indirectly determine the Atahas transgene expression. The second method measured the kinetics of chlorophyll fluorescence emission. Leaf discs pre-treated with imazapyr for 24 hours were evaluated using the modulated fluorimeter for maximum quantum efficiency of Photosystem II (PSII) (Fv/Fm) and relative electron transport rate (ETR). Results showed that almost all species analyzed presented a marked decrease in Fv/Fm after treatment with imazapyr. In addition, the ETR was significantly reduced in transgenic plants treated with the herbicide. Collectively, our results showed that it is possible to identify transgenic plants expressing Atahas gene and infer their levels of tolerance to imazapyr at a very early stage after transformation.

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  • Improvement of Selection Efficiency of Haploid Maize Seeds Using Fluorescence Imaging
    Younguk Kim, Jeong Heon Han, Jaeyoung Kim, Yeongtae Kim, Nyunhee Kim, Chaewon Lee, Seoyeoun Lee, Song Lim Kim, Moon Jong Kim, Si Hwan Ryu, Hongro Lee, Hyeonso Ji, Kyung-Hwan Kim, Jeongho Baek
    Korean Journal of Breeding Science.2022; 54(4): 276.     CrossRef
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Pumpkin (Cucurbita moschata) has been increasingly used as bloomless rootstock for cucumber (Cucumis sativus), but it is sensitive to low-temperature, which is the major bottleneck for winter cultivation. Hence, to develop low-temperature tolerant rootstock varieties, it is needed to identify tolerant germplasm from a wide range of genetic resources. For this, we developed a selection criterion for a quick assessment of low-temperature tolerance in pumpkin germplasms from different geographical origins. We considered various indexes for the fast evaluation of low-temperature tolerance, including seedling developmental stage, type of seedling (excised or non-excised), growth space, etc. Under the testing condition (17℃/7℃, 8 hours light/16 hours dark, 150 μmol m-2s-1 light intensity), we found a correlation (r=0.71*) in root growth between 3 weeks-cultured excised seedlings and 6 weeks-cultured non-excised seedlings. Therefore, we extrapolate that excised cotyledonary stage seedling treated for 3 weeks is sufficient to differentiate the tolerant germplasms. Using this screening method, we identified the “S81015” could prevail low-temperature stress. Further, we tested grafting compatibility and growth of grafted cucumbers under the low-temperature condition to assess the effect of rootstock and identify low-temperature tolerant and grafting-compatible rootstock germplasm. Upon grafting, we found a high correlation (r=0.97**) between the root fresh weight of 6 weeks-cultured non-excised seedlings and the shoot fresh weight of the grafted cucumbers. In summary, we could identify the low-temperature tolerant pumpkin germplasms by screening at the early developmental stage. Further, as a rootstock, the tolerant pumpkins also fortified the low-temperature tolerance of grafted cucumbers.

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  • Identification of a Novel Candidate Gene for Chilling Tolerance in Pumpkin (Cucurbita moschata) Using Whole-Genome Resequencing
    Hemasundar Alavilli, Jeong-Jin Lee, Chae-Rin You, Sang-Choon Lee, Kihwan Song
    Journal of Plant Biology.2023; 66(4): 317.     CrossRef
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Diversity Analysis of Bangladeshi Coastal Rice Landraces (Oryza sativa) for Morpho-Physiological and Molecular Markers’ Responses to Seedling Salinity Tolerance
Hafsa Sultana, Uzzal Somaddar, Swadesh Chandra Samanta, Abul Kashem Chowdhury, Gopal Saha
Plant Breed. Biotech. 2022;10(2):115-127.   Published online June 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.2.115

Development of salt tolerance in rice through breeding program is mainly depends on the salinity responses of the potential rice germplasms. Coastal rice landraces of Bangladesh possess diverse morphological and physiological responses to salinity. Hence, our target is to identify candidate salt-tolerant coastal rice genotypes as a new source of salt tolerance (12 dS/m). Here, we annotated 20 Bangladeshi coastal Aus landrace rice regarding their phenotypic and genetic relatedness to salinity tolerance through multivariate analyses of five morpho-physiological traits namely, salt injury score (SIS), ion-leakage, chlorophyll concentration, root-shoot reduction percentage and profiling of DNA using simple sequence repeat (SSR). Based on the standard evaluation score (SES) the salt-induced coastal rice landraces were grouped into highly susceptible (HS), susceptible (S), moderately tolerant (MT), tolerant (T) and highly tolerant (HT). Besides, a canonical discrimination analysis of the mean trait values of five morpho-physiological parameters confirmed the above mentioned five categories of salinity tolerance. Based on all morpho-physiological parameters one genotype (Kalihytta) as highly tolerant (HT), two genotypes (Manikmuri and Monsur IRRI) as tolerant (T) and five genotypes (Nara, Iratom 27, Matichak, Abdul high IRRI and Parija) were identified as moderately tolerant (MT) against salinity. Finally, the molecular characterization using two SSR markers (RM493 and RM3412) revealed Kalihytta, Nara, Iratom 27, Parija, Lal jamaibabu and Fullbadam, as tolerant against salt stress. Our candidate salt tolerant Aus rice genotypes could be useful as novel sources of salt tolerance for thriving salt-tolerant high yielding varieties in the coastal ecosystem of Bangladesh.

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  • Marker-assisted breeding accelerates the development of multiple-stress-tolerant rice genotypes adapted to wider environments
    Vignesh Mohanavel, Valarmathi Muthu, Rohit Kambale, Rakshana Palaniswamy, Prisca Seeli, Bharathi Ayyenar, Veeraranjani Rajagopalan, Sudha Manickam, Raghu Rajasekaran, Hifzur Rahman, Jagadeeshselvam Nallathambi, Manonmani Swaminathan, Gopalakrishnan Chella
    Frontiers in Plant Science.2024;[Epub]     CrossRef
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Comparative Analysis of Gene Expression Related to Salt Tolerance with Sorghum (Sorghum bicolor L. Moench) Mutants
Ji Su Seo, Jae Il Lyu, Jung Min Kim, Nguyen Ngoc Hung, Joon-Woo Ahn, Chang Soo Kim, Bo-Keun Ha, Soon-Jae Kwon
Plant Breed. Biotech. 2022;10(2):128-138.   Published online June 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.2.128

Sorghum is the fifth most important grain crop worldwide. It is not only used as food and feed, but also as a resource for biofuel production. In addition, it has potential uses as a model plant for research on adaptation to environmental stress. In this study, mutant sorghum lines were generated by gammy ray irradiation. Ten of the M6 sorghum mutant lines were selected from 28 mutant lines on the basis of agronomic characteristics. These 10 lines, along with their original accessions/cultivar, were evaluated to determine the germination rate and the shoot and root length under salt treatment. Compared with their original accessions, three mutant lines (B5, SY6, and SY7) showed significant differentiation under saline conditions (150 mM NaCl), with increased shoot length (by 1.3-2.2 times) and root length (by 1.5-2.5 times). We determined the transcript levels of 20 abiotic stress-responsive genes in B5 (the most salt-tolerant mutant) and its original accession. These genes included those encoding heat shock proteins, aquaporins, ROS scavenging system, and transcription factors. In the B5 mutant, 15 genes showed differences in transcript levels between the control and the salt treatment. Salt treatment resulted in significant up-regulation of Sb03g045840 and down-regulation of Sb3g030750 in the B5 mutant. Here, we reported a simple method to identify genes related to salt tolerance in a sorghum mutant.

Citations

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  • Alteration of gene expression profiles in the mutant line of Sorghum bicolor
    Sehyun Choi, Ji-Su Seo, Joon-Woo Ahn, Soon-Jae Kwon, Donghyun Jeon, Changsoo Kim
    Journal of Crop Science and Biotechnology.2023; 26(5): 537.     CrossRef
  • Deciphering the Genetic Mechanisms of Salt Tolerance in Sorghum bicolor L.: Key Genes and SNP Associations from Comparative Transcriptomic Analyses
    Donghyun Jeon, Jin-Baek Kim, Beum-Chang Kang, Changsoo Kim
    Plants.2023; 12(14): 2639.     CrossRef
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Genome-Wide Association Study of Blast Resistant in Korean Rice (Oryza sativa L.) Breed Lines
Tae-Ho Ham, Ja-Hong Lee, Seong-Gyu Jang, Muhyun Kim, Hongjia Zhang, Na-Eun Kim, Soon-Wook Kwon, Joohyun Lee
Plant Breed. Biotech. 2022;10(2):139-144.   Published online June 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.2.139

A total of 857 rice breed lines were used to evaluate rice blast resistance. Frequency of leaf spot index was skewed to the right of the 1-9 scale in bar plot, with a score of 7 showing the highest frequency. The average spot index score of 857 breed lines was 5.33. Associations showing higher than the threshold of ‒log10(P) = 5.17 were detected as significant associations. Significantly associated single nucleotide polymorphism (SNP) markers located within ± 250 kb on the lead SNP position was designated to one QTL locus of lead SNP markers. Five association loci were detected. Two associated QTLs detected on Chr. 4 were designated as qRB4.1 and qRB422, explaining 17.8% and 14.3% of total phenotypic variations, respectively. Associated QTLs detected on Chr. 1, 11, and 12 (one each) designated as qRB1, qRB11 and qRB12 explained 44.6%, 9.09%, and 13.7% of total phenotypic variations, respectively. We compared previously reported QTLs. The location of qRB4.2 was overlapped with the previously reported QTL for blast field resistance. The location of qRB12 was also overlapped with the field resistance leaf blast. The other one, qRB4.1, was overlapped with bacterial blight resistance.

Citations

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  • Genome-Wide Association Study of Body Conformation Traits in Tashi Goats (Capra hircus)
    Rong Yang, Di Zhou, Xiaoshan Tan, Zhonghai Zhao, Yanli Lv, Xingzhou Tian, Liqun Ren, Yan Wang, Jun Li, Yongju Zhao, Jipan Zhang
    Animals.2024; 14(8): 1145.     CrossRef
  • Genome-Wide Association Study of Submergence Tolerance in Rice (Oryza sativa L.)
    Seong-Gyu Jang, Backki Kim, Yongchul Kim, Soon-Wook Kwon
    Plant Breeding and Biotechnology.2023; 11(1): 25.     CrossRef
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