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Original Article

Estimation of Gene Effect and Combining Ability for Yield and Yield Components Using Line x Tester Analysis in Rice (Oryza sativa)

Plant Breeding and Biotechnology 2024;12:17-29.
Published online: March 14, 2024

1Rice Research Institute of Iran, Agricultural Research, Education and Extension Organization (AREEO), Rasht, Islamic Republic of Iran

*Corresponding to Mostafa Modarresi E-mail. m.modaresi@areeo.ac.ir
• Received: October 31, 2023   • Revised: December 31, 2023   • Accepted: January 8, 2024

Copyright © 2024 by the Korean Society of Breeding Science

This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Citations

Citations to this article as recorded by  Crossref logo
  • Combining ability and gene action analysis for growth and precocity in kola (Cola nitida (Vent) Schott. & Endl.)
    Abraham Akpertey, Paul Kwasi Krah Adu-Gyamfi, Esther Anokye, Alfred Arthur, Daniel Nyadanu
    Euphytica.2026;[Epub]     CrossRef
  • Genetic variability, heritability and genetic advance in Iranian local rice genotypes for yield, and some agronomic traits
    Mostafa Modarresi
    Reproduction and Breeding.2026; 6(1): 9.     CrossRef
  • Characterization of Iranian rice genetic resources for key grain quality traits
    Mostafa Modarresi
    Genetic Resources.2026; 7(13): 153.     CrossRef
  • Assessing genetic potential of direct seeded rice for yield and its component traits in upland conditions of Western Himalayas
    Surbhi Patyal, DP Pandey, Kumar Sanu, Arshia Prashar, Nijit Chauhan
    ORYZA- An International Journal on Rice.2026; 63(1): 27.     CrossRef

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Estimation of Gene Effect and Combining Ability for Yield and Yield Components Using Line x Tester Analysis in Rice (Oryza sativa)
Plant Breed. Biotech.. 2024;12:17-29.   Published online March 14, 2024
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Estimation of Gene Effect and Combining Ability for Yield and Yield Components Using Line x Tester Analysis in Rice (Oryza sativa)
Plant Breed. Biotech.. 2024;12:17-29.   Published online March 14, 2024
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Estimation of Gene Effect and Combining Ability for Yield and Yield Components Using Line x Tester Analysis in Rice (Oryza sativa)
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Fig. 1 Correlation coefficients between traits in studied genotypes. Blue colour indicates positive correlation, red colour indicates negative correlation, Multiplication indicates non-significance at the 5% probability level.
Estimation of Gene Effect and Combining Ability for Yield and Yield Components Using Line x Tester Analysis in Rice (Oryza sativa)

Characteristics of parental genotypes used in this research.

Genotypes Type Origin Characteristics
Saleh (Khazar (IR2071-625-152×TNAU7456) ×IR39385-20-1-2-1-2) Improved Iran (parents from IRRI) Suitable yield, high amylose content, low gelatinization temperature, low cooking quality, and non-fragrant
IR75479-199-3-3 Improved Philippines (IRRI) Suitable yield, lodging resistant, Intermediate amylose content, low cooking quality, and non-fragrant
Gohar (pusa1238-1 ×pusa 1238-81-6) Improved Iran (parents from India) High yield, lodging resistant, blast disease resistant, late-maturing, intermediate to high amylose content, low gelatinization temperature, and fragrant
Hashemi Landrace Iran Low yield, Grains with excellent market value (because of grain shape and taste quality), sensitive to lodging, early-maturing, intermediate amylose content, intermediate gelatinization temperature, and fragrant
Hasani Landrace Iran Low yield, intermediate amylose content, intermediate gelatinization temperature, sensitive to lodging, and fragrant
TH1 Landrace Iran Low yield, intermediate amylose content, intermediate gelatinization temperature, sensitive to lodging, and fragrant
Deylamani Landrace Iran Low yield, Grains with good market value (because of grain shape and taste quality), early-maturing, intermediate amylose content, intermediate gelatinization temperature, sensitive to lodging, and fragrant
Binam Landrace Iran Low yield, intermediate amylose content, intermediate gelatinization temperature, sensitive to lodging, and fragrant

Meteorological data related to rice growing season which has been recorded in Rasht agricultural meteorological station (near the research farm).

Date Average temperature (°C) Precipitation (mm) Total sunny hours (h)
Max Min
April 16.8 9.9 131 101
May 24.6 13.8 65 223
June 30.5 18.8 10 306
July 31.0 21.4 171 253
August 31.4 20.4 25 227
Mean 26.9 16.9 80 222

Analysis of variance from line×testers mating design for the investigated characters.

S.O.V df Grain yield plant-1 Hundred grain weight Grains per panicle Days to heading Number of panicles plant-1 Panicle length Plant height
Replication 2 1.925* 0.003ns 64.701** 1.206ns 2.453** 8.858ns 86.543*
Genotypes 22 265.312** 0.171** 539.367** 59.178** 76.417** 28.021** 1086.759**
Parents 7 96.640** 0.319** 492.928** 92.137** 27.279** 12.994** 1121.708**
Pa. vs Crosses 1 823.692** 0.059** 35.353ns 90.145** 84.324** 180.928** 9397.234**
Crosses 14 309.764** 0.104** 598.587** 40.487** 100.421** 24.613** 475.679**
Lines 4 300.887ns 0.037ns 625.490ns 65.210ns 57.823ns 26.743ns 384.551*
Testers 2 913.172* 0.318ns 2023.466** 63.301ns 148.556ns 56.409ns 2303.081**
Lines×Testers 8 163.351** 0.085** 228.915** 22.422** 109.687** 15.599** 64.393**
Error 44 1.660 0.007 55.525 1.907 4.819 3.535 20.901
C.V. (percent) 4.022 3.123 6.600 1.576 11.038 6.301 3.017

Descriptive statistics of evaluated traits in considered genotypes.

Traits Range Minimum Maximum Mean Standard error
Plant height (cm) 72 113 185 151.522 2.308
Panicle length (cm) 17 22 39 29.842 0.410
Number of panicles plant-1 23 12 35 19.889 0.636
Days to heading) 18 77 95 87.607 0.544
Grains per panicle 64 85 149 112.897 1.754
Hundred grain weight (g) 1.15 2.2 3.35 2.702 0.030
Grain yield plant-1 (g) 48 19 67 32.031 1

Mean performance for yield and yield components of the parents and their crosses.

Genotypes Grain yield plant-1 (g) Hundred grain weight (g) Grains per panicle Days to heading Number of panicles plant-1 Panicle length (cm) Plant height (cm)
Hashemi×Saleh 40.867 2.767 117 91 13.333 33.333 162
Hasani×Saleh 34 2.683 104.667 89.333 24.667 27 142.667
TH1×Saleh 32.800 2.587 124.667 89.667 17 31.567 157.333
Deylamani×Saleh 32.667 2.233 126 85 13.333 28 149
Binam×Saleh 34.361 2.523 118.028 87.583 17 29.325 152.250
Hasani×Gohar 40.333 2.791 110.962 89.453 16.943 31.893 169.433
TH1×Gohar 31.787 2.848 128.637 89.920 25.164 33.989 176.648
Hashemi×Gohar 64 2.700 114.667 91 35 31.333 185
Deylamani×Gohar 33 3.033 144.333 90.667 16.667 39 170.667
Binam×Gohar 41.667 2.800 111.333 93 18 32 170
Hashemi×IR75479-199-3-3 25 2.900 112.667 89 19.333 30 162.333
Hasani×IR75479-199-3-3 25.633 2.823 95.667 80.333 27.333 26 142
TH1×IR75479-199-3-3 28.467 2.767 91.667 85 23.333 33.333 146.667
Deylamani×IR75479-199-3-3 19.400 2.600 106.667 90.667 21.333 29.667 158
Binam×IR75479-199-3-3 34.333 2.800 94.333 92 22 30.833 156.667
Saleh 24.667 2.300 112.667 88 19.333 30 117.333
IR75479-199-3-3 26 2.343 115 91 16 26.667 118
Gohar 40.667 2.920 139 94.333 20.667 27 121.667
Hashemi 26.667 2.583 109.333 85.333 16.333 27.333 151.333
Hasani 26.200 3.283 109 77.333 16 23.667 124.667
TH1 21.867 2.567 113.333 80.667 12 28 141.667
Deylamani 24.667 2.500 102.333 83.333 13 28 137
Binam 27.667 2.800 94.667 88.333 20 30.333 172.667

LSD (5%) 2.120 0.139 12.262 2.273 3.612 3.094 7.523

Specific combining ability values of crosses for studied traits.

Genotypes Grain yield plant-1 (g) Hundred-grain weight (g) Grains per panicle Days to heading Number of panicles plant-1 Panicle length (cm) Plant height (cm)
Binam×Gohar -2.723** -0.018 -5.132 -0.228 -2.659* -0.958 -3.944
Binam×IR75479-199-3-3 5.534** 0.038 0.345 2.180** 1.029 1.172 3.939
Binam×Saleh -2.811** -0.020 5.477 -1.953* 1.629 -0.215 0.005
Deylamani×Gohar -2.959** 0.300** 10.100* -0.478 -2.103 3.273** -2.861
Deylamani×IR75479-199-3-3 -0.968 -0.077 -5.780 2.930** 2.252 -0.864 5.689*
Deylamani×Saleh 3.927** -0.224** -4.319 -2.453** -0.148 -2.409* -2.828
Hasani×Gohar -0.592 -0.086 -1.370 3.047** -7.697 1.357 3.761
Hasani×IR75479-199-3-3 0.299 0.003 5.121 -2.665** 2.382 -1.240 -2.456
Hasani×Saleh 0.293 0.083 -3.751 -0.382 5.315** -0.118 -1.306
Hashemi×Gohar 13.108** -0.200** 8.678* -1.700* 10.786** -2.460* 0.917
Hashemi×IR75479-199-3-3 -10.301** 0.057 11.108* -0.292 -5.193** -0.497 -0.533
Hashemi×Saleh -2.807** 0.143** -2.430 1.992* -5.593** 2.958** -0.383
TH1×Gohar -6.834** 0.003 5.080 -0.642 1.673 -1.212 2.127
TH1×IR75479-199-3-3 5.437** -0.021 -10.104* -2.154** -0.470 1.429 -6.638*
TH1×Saleh 1.398 0.181 5.024 2.796** -1.203 -0.216 4.512
S.E. (SCA) 0.744 0.0487 4.302 0.797 1.267 1.086 2.640

The relative contributions of lines, testers, and their interaction with the total variance for the investigated characters.

Contribution Grain yield plant-1 (g) Hundred-grain weight (g) Grains per panicle (no) Days to heading (day) Number of panicles plant-1 Panicle length (cm) Plant height (cm)
Lines 27.753 10.227 29.856 38.805 16.452 31.044 23.098
Testers 42.114 43.407 48.291 15.095 21.133 32.741 69.167
Lines×Testers 30.134 46.366 21.853 46.101 62.415 36.216 7.735

General combining ability values of parents for studied traits.

Parents Grain yield plant-1 Hundred-grain weight Grains per panicle Days to heading Number of panicles plant-1 Panicle length Plant height
Lines
Binam 2.233** -0.016ns -5.521** 2.420** -1.696* 0.305ns 0.405ns
Deylamani -6.199** -0.101** 12.247** 0.336ns -3.585** 0.564ns -0.822ns
Hasani -1.232** 0.042ns -9.654** -4.402** 2.285** -2.727** -8.678**
Hashemi 8.735** 0.065* 1.358ns 1.892** 1.859* 0.531ns 9.733**
TH1 -3.537** 0.010ns 1.570ns -0.246ns 1.137ns 1.938** 0.172ns
S.E. (Lines) 0.429 0.028 2.484 0.460 0.731 0.626 1.523
S.E. (d) gi – gj (lines) 0.607 0.039 3.512 0.651 1.034 0.886 2.155
Testers
Gohar 7.603** 0.111** 8.567** 2.366** 1.659** 2.238** 14.305**
IR75479-199-3-3 -7.988** 0.054* -13.220** -1.042** 1.971** -1.058* -6.911**
Saleh 0.385ns -0.165** 4.653* -1.325** -3.629** -1.180* -7.394**
S.E. (Testers) 0.332 0.021 1.924 0.356 0.566 0.485 1.180
S.E. (d) gi - gj (testers) 0.470 0.031 2.721 0.504 0.801 0.686 1.669

Estimates of genetic components and heritability of traits in the studied genotypes.

Parameters Grain yield plant-1 (g) Hundred-grain weight (g) Grains per panicle (no) Days to heading (day) Number of panicles plant-1 Panicle length (cm) Plant height (cm)
σGCA2 31.057 0.004 78.415 3.832 0.100 1.912 87.243
σA2 124.229 0.017 313.660 15.328 0.200 7.648 348.970
σD2 215.738 0.102 231.638 26.379 140.943 16.256 53.308
σE2 0.516 0.003 18.396 0.879 1.327 1.136 8.137
hbs2 0.998 0.977 0.967 0.979 0.991 0.955 0.980
hns2 0.365 0.138 0.556 0.360 0.043 0.305 0.850
σSCA2 215.738 0.102 231.638 26.379 140.943 16.256 53.308
σGCA2/σSCA2 0.144 0.041 0.339 0.145 0.001 0.118 1.637
σD2/σA21/2 1.318 2.470 0.859 1.312 37.542 1.458 0.076
Table 1 Characteristics of parental genotypes used in this research.
Table 2 Meteorological data related to rice growing season which has been recorded in Rasht agricultural meteorological station (near the research farm).
Table 3 Analysis of variance from line×testers mating design for the investigated characters.

ns, * and ** are not significant, significant at 0.05 and 0.01 probability, respectively.

Table 4 Descriptive statistics of evaluated traits in considered genotypes.
Table 5 Mean performance for yield and yield components of the parents and their crosses.

Green and red show the highest and lowest values, respectively. Meanwhile, intermediate values are indicated with yellow and orange.

Table 6 Specific combining ability values of crosses for studied traits.

* and ** are significant at 0.05 and 0.01 probability, respectively

Table 7 The relative contributions of lines, testers, and their interaction with the total variance for the investigated characters.
Table 8 General combining ability values of parents for studied traits.

ns, *, and ** are not significant, significant at 0.05 and 0.01 probability, respectively.

Table 9 Estimates of genetic components and heritability of traits in the studied genotypes.

σGCA2 : General combining ability variance, σA2 : Additive genetic variance, σD2 : Dominance genetic variance, σE2 : Environment variance, hbs2 : Broad sense heritability, hns2 : Narrow sense heritability, σSCA2 : Specific combining ability variance, σGCA2/σSCA2 : Ratio of variance of general to specific combining ability, and σD2/σA21/2 : Degree of dominance.