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Research Article

Genetic Variation of Common Millet (Panicum miliaceum L.) Collected from East Asia Based on Simple Sequence Repeats (SSRs)

Plant Breeding and Biotechnology 2020;8(2):186-195.
Published online: June 1, 2020

Department of Applied Plant Sciences, College of Agriculture and Life Sciences, Kangwon National University, Chuncheon 24341, Korea

*Corresponding author Ju Kyong Lee, jukyonglee@kangwon.ac.kr, Tel: +82-33-250-6415, Fax: +82-33-255-5558

These authors contributed equally.

• Received: May 5, 2020   • Revised: May 14, 2020   • Accepted: May 15, 2020

Copyright © 2020 by the Korean Society of Breeding Science

This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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  • Development of iron and zinc transporter based genic SSR markers in foxtail millet and their cross- genera transferability in little millet
    Kumari Anjani, Kaushal Kumar, V. K. Sharma
    Cereal Research Communications.2026; 54(2): 875.     CrossRef

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Genetic Variation of Common Millet (Panicum miliaceum L.) Collected from East Asia Based on Simple Sequence Repeats (SSRs)
Plant Breed. Biotech.. 2020;8(2):186-195.   Published online June 1, 2020
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Genetic Variation of Common Millet (Panicum miliaceum L.) Collected from East Asia Based on Simple Sequence Repeats (SSRs)
Plant Breed. Biotech.. 2020;8(2):186-195.   Published online June 1, 2020
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Genetic Variation of Common Millet (Panicum miliaceum L.) Collected from East Asia Based on Simple Sequence Repeats (SSRs)
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Fig. 1 Magnitude of ΔK as a function of K. The peak value of ΔK was at K = 2, suggesting two genetic clusters in the 75 common millet accessions.
Fig. 2 UPGMA dendrogram and population structure in 75 common millet accessions based on 9 SSR primer sets.
Genetic Variation of Common Millet (Panicum miliaceum L.) Collected from East Asia Based on Simple Sequence Repeats (SSRs)

List of 75 common millet accessions of RDA-Genebank used in this study.

No. IT No. Country Accessions name No. IT No. Country Accessions name
1 IT 103301 Korea Gangwon1 41 IT 100287 Korea Jeonnam1
2 IT 185521 Korea Gangwon2 42 IT 100294 Korea Jeonnam2
3 IT 185524 Korea Gangwon3 43 IT 100304 Korea Jeonnam3
4 IT 105308 Korea Gangwon4 44 IT 100279 Korea Jeonbuk1
5 IT 108894 Korea Gangwon5 45 IT 100317 Korea Jeonbuk2
6 IT 185523 Korea Gangwon6 46 IT 108938 Korea Jeonbuk3
7 IT 185526 Korea Gangwon7 47 IT 108939 Korea Jeonbuk4
8 IT 185545 Korea Gangwon8 48 IT 113300 Korea Jeonbuk5
9 IT 100290 Korea Gyeonggi1 49 IT 113321 Korea Jeonbuk6
10 IT 100298 Korea Gyeonggi2 50 IT 100263 Korea Chungnam1
11 IT 103428 Korea Gyeonggi3 51 IT 100267 Korea Chungnam2
12 IT 100268 Korea Gyeongnam1 52 IT 100311 Korea Chungnam3
13 IT 100269 Korea Gyeongnam2 53 IT 100264 Korea Chungbuk1
14 IT 100310 Korea Gyeongnam3 54 IT 100289 Korea Chungbuk2
15 IT 162900 Korea Gyeongnam4 55 IT 297380 Japan Japan1
16 IT 162902 Korea Gyeongnam5 56 IT 297381 Japan Japan2
17 IT 185531 Korea Gyeongnam6 57 IT 297382 Japan Japan3
18 IT 100275 Korea Gyeongnam7 58 IT 297383 Japan Japan4
19 IT 100288 Korea Gyeongnam8 59 IT 297384 Japan Japan5
20 IT 103621 Korea Gyeongnam9 60 IT 297391 Japan Japan6
21 IT 181969 Korea Gyeongnam10 61 IT 297392 Japan Japan7
22 IT 185551 Korea Gyeongnam11 62 IT 297393 Japan Japan8
23 IT 194498 Korea Gyeongnam12 63 IT 297394 Japan Japan9
24 IT 100262 Korea Gyeongbuk1 64 IT 297395 Japan Japan10
25 IT 100274 Korea Gyeongbuk2 65 IT 297396 Japan Japan11
26 IT 100297 Korea Gyeongbuk3 66 IT 297398 Japan Japan12
27 IT 100892 Korea Gyeongbuk4 67 IT 235823 China China1
28 IT 109200 Korea Gyeongbuk5 68 IT 236994 China China2
29 IT 115190 Korea Gyeongbuk6 69 IT 236995 China China3
30 IT 185528 Korea Gyeongbuk7 70 IT 237297 China China4
31 IT 100301 Korea Gyeongbuk8 71 IT 237298 China China5
32 IT 100313 Korea Gyeongbuk9 72 IT 237299 China China6
33 IT 103775 Korea Gyeongbuk10 73 IT 250268 China China7
34 IT 105470 Korea Gyeongbuk11 74 IT 250273 China China8
35 IT 108704 Korea Gyeongbuk12 75 IT 250277 China China9
36 IT 112797 Korea Gyeongbuk13
37 IT 112801 Korea Gyeongbuk14
38 IT 113600 Korea Gyeongbuk15
39 IT 163725 Korea Gyeongbuk16
40 IT 185540 Korea Gyeongbuk17

Characteristics of the 9 common millet microsatellite loci used in the study.

Primer name Forward sequence Rerverse sequence Amplified length Repeat motif
F265 GGCTTTGCTAGGGTTTCTCC GGTGTGAAGTTGCCCAGATT 226 (GA)13
F653 CGATGAACGAAAATTCACCC GTTCATTCGTCCAAATGCCT 258 (CA)22
F1065 TCTGGACATGCTTTCACCAG CCTACCTCGTAACACTGCGG 267 (AC)21
F1429 AATATCCCTTTTGTCGCACG ATGCATTGATGGGCTTGATT 181 (GA)13
F1387 TTTCAGGGACTGGACTGGAC GTAGGGGGTAGCTGAGAGCC 105 (CT)9
F1380 GCCTCCTGTCTTGTAGCGTC AGGGTAGGCTGAGAGCCTGT 121 (CT)8
F836 GCGCAGTAATATATTTCAGTAATTCA GCATCATCGTCAAGACCTCA 225 (GT)17
F1760 TGTGGGAGAGAAGTGGGC CAAGGAAGGAATAAACCGCA 187 (TG)15
BM396 TTGATTATGCTTTGGAGGGG CCTCTCCTTACACGGGGATT 248 (GT)11

Estimates of MAF, allele number, GD and PIC of 9 SSR primers among 75 common millet accessions of Korea, China and Japan.

SSR Loci Allele no. MAF* GD** PIC***




Total (N=75) Korea (N=54) China (N=9) Japan (N=12) Total (N=75) Korea (N=54) China (N=9) Japan (N=12) Total (N=75) Korea (N=54) China (N=9) Japan (N=12) Total (N=75) Korea (N=54) China (N=9) Japan (N=12)
BM396 4 3 2 - 0.933 0.926 0.889 - 0.127 0.139 0.198 - 0.124 0.133 0.178 -
F1065 5 2 3 2 0.787 0.889 0.778 0.917 0.363 0.198 0.370 0.153 0.341 0.178 0.340 0.141
F265 4 3 4 3 0.813 0.889 0.444 0.833 0.323 0.203 0.667 0.292 0.303 0.192 0.607 0.272
F1429 3 2 2 2 0.907 0.944 0.667 0.917 0.171 0.105 0.444 0.153 0.161 0.099 0.346 0.141
F1387 4 3 3 2 0.773 0.852 0.444 0.833 0.377 0.261 0.642 0.278 0.347 0.241 0.568 0.239
F1760 2 - - 2 0.867 - - 0.833 0.231 - - 0.278 0.204 - - 0.239
F836 3 2 3 2 0.827 0.907 0.556 0.667 0.291 0.168 0.568 0.444 0.256 0.154 0.489 0.346
F653 3 2 2 2 0.800 0.981 0.778 0.75 0.339 0.036 0.346 0.375 0.312 0.036 0.286 0.305
F1380 2 - 2 - 0.907 - 0.778 - 0.169 - 0.346 - 0.155 - 0.286 -
Total 30 17 21 15
Mean 3.33 2.43 2.63 2.14 0.846 0.913 0.667 0.821 0.266 0.159 0.448 0.282 0.245 0.148 0.387 0.240
Table 1 List of 75 common millet accessions of RDA-Genebank used in this study.
Table 2 Characteristics of the 9 common millet microsatellite loci used in the study.
Table 3 Estimates of MAF, allele number, GD and PIC of 9 SSR primers among 75 common millet accessions of Korea, China and Japan.