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"Yeo-Tae Yun"

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"Yeo-Tae Yun"

Research Articles
Identification of QTLs for Cold Tolerance at Seedling Stage Using a Population Derived from an Inter-specific Cross in Rice
Kyu-Chan Shim, Yeo-Tae Yun, Ju-Won Kang, Sang-Nag Ahn
Plant Breed. Biotech. 2022;10(4):282-289.   Published online December 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.4.282

Cold stress is one of the serious abiotic stresses for stable rice production especially in high-latitude temperate region and high-altitude tropical area. Improving cold tolerance at seedling stage led stable seedling growth with yield stability. In this study, QTLs for cold tolerance at seedling stage were identified using the 96 introgression lines (ILs) derived from an inter-specific cross between Hwaseong (Oryza sativa) and Oryza rufipogon. Three QTLs were detected and the O. rufipogon alleles at two QTL (qCTS1 and qCTS12) improved cold tolerance in the Hwaseong genetic background whereas the O. rufipogon allele at qCTS10 on chromosome 10 decreased cold tolerance. Among these three QTLs, a major QTL qCTS12 explained 27.5% of phenotypic variation. Fine-mapping indicated that qCTS12 was different from those QTL reported in previous studies based on the map location suggesting that qCTS12 might be a new allele and is not associated with deleterious genes such fertility reduction. Among the 96 introgression lines, two lines, CR60 and CR61 were selected based on enhanced cold tolerance at seedling stage. qCTS12, therefore, provides a valuable allele for breeding rice with improved cold tolerance.

Citations

Citations to this article as recorded by  
  • Stage-specific screening reveals differential resilience response to cold stress in rice
    Fahamida Akter, Partha S. Biswas, Abul Kalam Mohammad Aminul Islam, Mohammad Sharif Raihan, Md. Mizanur Rahman, Khandakar Md. Iftekharuddaula, Mohammad Rafiqul Islam, John Damien Platten, Md Ashrafuzzaman
    PLOS One.2026; 21(4): e0338290.     CrossRef
  • Genome-wide Association Study for Cold Tolerance at Seedling Stage Using a Core Collection of Korean Rice
    Sa-Eun Park, Ngoc Ha Luong, Sang-Nag Ahn, Kyu-Chan Shim
    Journal of Agriculture & Life Science.2025; 59(2): 13.     CrossRef
  • Identification of QTLs Related to Plant Growth at Low Temperatures in the Seedling Stage of Tongil Type Rice after Transplanting
    Seong-Gyu Jang, Ji-Yoon Lee, Ju-Won Kang, Youngho Kwon, So-Myeong Lee, Sais-Beul Lee, Jun-Hyeon Cho, Dong-Soo Park, Jong-Hee Lee, Soon-Wook Kwon, Sumin Jo
    Korean Journal of Breeding Science.2024; 56(3): 225.     CrossRef
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Identification of QTLs Controlling Seedling Traits in Temperate Japonica Rice under Different Water Conditions
Yeo-Tae Yun, Hyun-Jung Kim, Thomas H. Tai
Plant Breed. Biotech. 2019;7(2):106-122.   Published online June 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.2.106

The
objective
of this study was to detect QTLs for rice seedling traits under normal water (control) and low water conditions (drought stress). Ninety-eight recombinant inbred lines (RILs) from a cross between closely-related japonica cultivars, M-203 and M-206 were grown under both low water and normal water conditions. QTLs for morphological traits were investigated at seedling stage using 5,164 single nucleotide polymorphisms via genotyping-by-sequencing. Twenty-three QTLs were associated with four seedling traits: shoot length (SL), root length (RL), shoot dry weight (SW) and root dry weight (RW), were detected and most QTLs were clustered on chromosome 1, 6, 7 and 11. Under normal water conditions, nine QTLs for seedling traits were detected and M-203 alleles increased all the values. The locations of most QTLs were consistent with genes that regulate or respond to auxin and gibberellin. For drought tolerance, fourteen QTLs were detected including seven for drought stress conditions and seven for relative performance (values from drought stress conditions/normal water conditions). Seven QTLs from drought stress conditions coincided with the loci of previously identified drought tolerance genes. Based on the shoot and root length under drought stress conditions, five lines exhibiting the highest values in common were selected as a drought tolerance group. Those lines exhibited better growth than the parents under drought stress conditions and had QTLs alleles for drought tolerance detected in this study. QTL information and selected lines may be used for improving seedling vigor and drought tolerance of rice in breeding programs.

Citations

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  • Morpho-physiological and biochemical response of rice (Oryza sativa L.) to drought stress: A review
    Utsav Bhandari, Aakriti Gajurel, Bharat Khadka, Ishwor Thapa, Isha Chand, Dibya Bhatta, Anju Poudel, Meena Pandey, Suraj Shrestha, Jiban Shrestha
    Heliyon.2023; 9(3): e13744.     CrossRef
  • Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions
    Bahman Khahani, Elahe Tavakol, Vahid Shariati, Laura Rossini
    Scientific Reports.2021;[Epub]     CrossRef
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Variation of Yield and Quality in Early Maturing Rice Cultivars by Transplanting Date in Chungnam Plain Area in Korea
Yeo-Tae Yun, Chong-Tae Chung, Yeong-Ju Lee, Han-Jung Na, Jae-Chul Lee, Dong-Hee Lee, Kwang-Won Lee, Ju-Won Kang, Sang-Nag Ahn
Plant Breed. Biotech. 2015;3(1):47-57.   Published online March 31, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.1.047

Studies were initiated for two consecutive years to examine the effects of transplanting date on the yield and quality of early maturing rice cultivars and to select rice cultivars capable of adapting to early transplanting in the middle plain area. The experiment was laid out in a split-plot design with 3 replications. The main plots consisted of two transplanting dates viz. early (25th of April) and ordinary (25th of May), with sub-plots containing eight cultivars. For early transplanting the mean temperature at the grain filling stage was lower than for ordinary transplanting, while the rice grain quality traits and palatability values were improved. Early transplanting results in 11 days earlier heading, higher head rice yield and lower milled rice yield than ordinary transplanting. Significant differences among the eight cultivars tested in this study were observed for most traits. Among cultivars, ‘Joami’ demonstrated the highest palatability. ‘Joami’ also performed better in head rice ratio and head rice yield than ‘Unkwang’, which is widely cultivated in the middle plain area. Palatability value (PV) showed significant positive correlations with head rice ratio (HR) and amylose content (AC), and negative correlations with chalky rice ratio (CR) and protein content (PC). Mean temperature (MT) was positively correlated with CR and PC, and negatively correlated with HR and AC. The highest positive and negative correlations among the rice quality traits were observed between HR and AC (r = 0.734), and HR and CR (r = −0.944), respectively. Based on the research findings, ‘Joami’ is suitable for early transplanting for cultivation in the Chungnam plain area.

Citations

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  • Effect of Nitrogen Application Methods on Yield and Grain Quality of an Extremely Early Maturing Rice Variety
    Yeotae Yun, Gyucheol Kim, Giwon Cho, Youngju Lee, Tugsang Yun, Hakhun Kim
    Agriculture.2023; 13(4): 832.     CrossRef
  • Effect of Transplanting Date on Agronomic and Grain Quality Traits Using Early-Maturing Rice Varieties
    Yeotae Yun, Gyucheol Kim, Giwon Cho, Tugsang Yun
    Agronomy.2023; 13(5): 1195.     CrossRef
  • “Yeoreumi,” an Early Maturing Rice Cultivar Adaptable for Early-Transplanting Cultivation in the Chungnam Plain Area
    Yeotae Yun, Gyucheol Kim, Giwon Cho, Chongtae Chung, Tugsang Yun
    Korean Journal of Breeding Science.2022; 54(4): 405.     CrossRef
  • ‘Bbareumi’, an Extremely Early-Maturing Rice Cultivar Adaptable for Early Transplanting, in the Chungnam Plain Area
    Yeotae Yun, Chongtae Chung, Gyucheol Kim, Tugsang Yun
    Korean Journal of Breeding Science.2022; 54(3): 238.     CrossRef
  • Changes in Growth and Quality Traits According to Transplanting Dates using ‘Bbareumi’, an Extremely Early Maturing Rice Cultivar, in the Chungnam Plain Area
    Yeotae Yun, Gyucheol Kim, Giwon Cho, Tugsang Yun
    Korean Journal of Breeding Science.2022; 54(4): 305.     CrossRef
  • Development of an expert vision-based system for inspecting rice quality indices
    S.H. Payman, A. Bakhshipour, H. Zareiforoush
    Quality Assurance and Safety of Crops & Foods.2018; 10(1): 103.     CrossRef
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Linkage Analysis of SPR3 Locus and Pi45(t), and Evaluation of Yield-Related Traits Using Near Isogenic Lines From a Cross Between Japonica Rice
Mark Edward Fabreag, Dong-Min Kim, Ju-Won Kang, Soo-Jin Kwon, Yeo-Tae Yun, Sang-Nag Ahn
Plant Breed. Biotech. 2014;2(2):117-125.   Published online June 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.2.117

Although traditional rice varieties and wild rice species exhibit vast genetic diversity, the transfer of useful genes to modern varieties is often hampered by linkage drag. In this study, the previously identified blast resistance locus Pi45(t) from a cross between ‘Ilpumbyeo’ and ‘Moroberekan’ was linked to the spreading-type panicle caused by the SPR3 locus. Using InDel4 and RM17579 linked to the Pi45(t) and the SPR3, respectively, the distance between the two loci was estimated to be 6.9cM. This suggests a tight, yet incomplete linkage and provides the opportunity to utilize Pi45(t) in breeding programs without including SPR3. Two groups based on the genotype at the SPR3 locus were assembled; the CLosed Panicle (CLP) and SPReading panicle (SPR) groups, with lines which were homozygous for the Ilpumbyeo and Moroberekan alleles, respectively. A comparison between the traits of CLP and SPR groups revealed a decrease in 1000-grain weight and length and an increase in spikelets per panicle and secondary branches in the SPR group. This complicates selection against SPR3 as it is not clear whether these quantitative trait loci are linked to either SPR3 or Pi45(t). Re-evaluation of these traits using lines recombinant at the two loci would be necessary to clarify this issue.

Citations

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  • Directional upgrading of brown planthopper resistance in an elite rice cultivar by precise introgression of two resistance genes using genomics-based breeding
    Hongbo Wang, Yi Gao, Fangming Mao, Lizhong Xiong, Tongmin Mou
    Plant Science.2019; 288: 110211.     CrossRef
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