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"Shadi Rahimi"

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"Shadi Rahimi"

Review Articles
Current Applicable DNA Markers for Marker Assisted Breeding in Abiotic and Biotic Stress Tolerance in Rice (Oryza sativa L.)
Franz Marielle Nogoy, Jae-Young Song, Sothea Ouk, Shadi Rahimi, Soon Wook Kwon, Kwon-Kyoo Kang, Yong-Gu Cho
Plant Breed. Biotech. 2016;4(3):271-284.   Published online August 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.3.271

Abiotic and biotic stresses adversely affect rice (Oryza sativa L.) growth and yield. Conventional breeding is a very effective method to develop tolerant rice variety; however, it takes a decade long to establish a new rice variety. DNA-based markers have a huge potential to improve the efficiency and precision of conventional plant breeding via marker-assisted selection (MAS). The large number of quantitative trait loci (QTLs) mapping studies for rice has provided an abundance of DNA marker-trait associations. The limitations of conventional breeding such as linkage drag and lengthy time consumption can be overcome by utilizing DNA markers in plant breeding. The major applications of DNA markers such as MAS, QTL mapping and gene pyramiding have been surveyed. In this review, we presented the latest markers available for some of the most important abiotic and biotic stresses in rice breeding programs. Achieving a significant impact on crop improvement by marker assisted breeding (MAB) represents the great challenge for agricultural scientists in the next few decades.

Citations

Citations to this article as recorded by  
  • Efficiency of doubled haploid technology in mining of multiple BB resistance genes from indica rice hybrid
    Sudhansu Sekhar Bhuyan, Byomkesh Dash, Prachitara Rout, Nupur Naik, Manjusha Chandravani, Nibedita Swain, Ram Lakhan Verma, Jawahar Lal Katara, Arup Kumar Mukherjee, C. Parameswaran, BN. Devanna, Snigdha Samir Pattnaik, Sanghamitra Samantaray
    Cereal Research Communications.2025; 53(3): 1319.     CrossRef
  • The Development of Multi-Resistant Rice Restorer Lines and Hybrid Varieties by Pyramiding Resistance Genes against Blast and Brown Planthopper
    Zhao Deng, Peng Qin, Kaiyu Liu, Nan Jiang, Tianze Yan, Xuanwen Zhang, Chenjian Fu, Guangcun He, Kai Wang, Yuanzhu Yang
    Agronomy.2024; 14(5): 878.     CrossRef
  • Emerging Trends in Wheat (Triticum spp.) Breeding: Implications for the Future
    Mujahid Alam, P. Stephen Baenziger, Katherine Frels
    Frontiers in Bioscience-Elite.2024;[Epub]     CrossRef
  • Genomics and transcriptomics to protect rice (Oryza sativa. L.) from abiotic stressors: -pathways to achieving zero hunger
    Mushtaq Ahmad
    Frontiers in Plant Science.2022;[Epub]     CrossRef
  • Advances from Conventional to Modern Plant Breeding Methodologies
    Sashi Lamichhane, Sapana Thapa
    Plant Breeding and Biotechnology.2022; 10(1): 1.     CrossRef
  • Review on harnessing biotechnological tools for the development of stable bacterial wilt resistant solanaceous vegetable crops
    Shweta Sharma, Viveka Katoch, Devinder Kumar Banyal
    Scientia Horticulturae.2021; 285: 110158.     CrossRef
  • Genotyping for Blast (Pyricularia oryzae) Resistance Genes in F2 Population of Supa Aromatic Rice (Oryza sativa L.)
    L. Kanyange, J. Kamau, O. Ombori, A. Ndayiragije, M. Muthini
    International Journal of Genomics.2019; 2019: 1.     CrossRef
  • Breeding Hybrid Rice with Genes Resistant to Diseases and Insects Using Marker-Assisted Selection and Evaluation of Biological Assay
    Me-Sun Kim, Sothea Ouk, Kuk-Hyun Jung, Yoohan Song, Le Van Trang, Ju-Young Yang, Yong-Gu Cho
    Plant Breeding and Biotechnology.2019; 7(3): 272.     CrossRef
  • Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking
    Gitishree Das, Jayanta Kumar Patra, Kwang-Hyun Baek
    Frontiers in Plant Science.2017;[Epub]     CrossRef
  • Application and utilization of marker assisted selection for biotic stress resistance in hybrid rice (Oryza sativaL.)
    Jae-Young Song, Sothea Ouk, Franz Marielle Nogoy, Marjohn C. Niño, Soon Wook Kwon, Woongoo Ha, Kwon-Kyoo Kang, Yong-Gu Cho
    Journal of Plant Biotechnology.2016; 43(3): 317.     CrossRef
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Genomics Researches and Their Applications in Plant Breeding at PAG XXIV Conference
Franz Marielle Nogoy, Shadi Rahimi, Kwon-Kyoo Kang, Yong-Gu Cho
Plant Breed. Biotech. 2016;4(1):16-28.   Published online February 28, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.1.16

The rise of whole genome sequences of different plants provided more understanding about the gene regulation and genome evolution in further studying plants. More and more pathways and networks are identified by novel gene discoveries. Therefore, the Plant and Animal Genome Conference (PAG XXIV) provides a good venue to share the recent progress in the area of plant research genome sequencing technologies in various plants. However, this information can make a powerful system for developing improved crop varieties. By the way, the genome annotation and assembly is an essential key for breeding of stress-tolerant plants. PAG XXIV demonstrated different works about the extensive use of genomic databases accompanied by bioinformatics tools to accelerate breeding methods, discovery of new approaches to genomics, further increasing biomass of bioenergy crops, and explaining the genetic mechanisms in plant growth and defense. This review article summarizes some of the researches in various plants of rice, corn, wheat, cottonwood, switchgrasses, Thinopyrum, wheatgrass and Arabidopsis presented in PAG XXIV with the focus on genome technologies and their applications in plant breeding.

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Global Trends in Plant Genomics Research to Improve Crop Productivity at PAG XXIV Conference
Shadi Rahimi, Kwon-Kyoo Kang, Yong-Gu Cho
Plant Breed. Biotech. 2016;4(1):1-15.   Published online February 28, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.1.1

Increasing demand for food commodities and energy supply highlight the necessity to further improve crop productivity. At the Plant and Animal Genome Conference (PAG XXIV), recent developments and future plans for genomics research of plants and animals were presented. PAG XXIV provided a forum to explore crop genomes with the aim of providing new opportunities for crop breeding and the foundation for functional genomic studies to improve agriculture production and help feed the growing population. Genetic diversity and population structure studies of crops have allowed us to explore alleles related to different characteristics important for plant breeding. Several useful databases were introduced in PAG XXIV. They were developed to integrate a growing set of commonly used data types and analysis tools with new capabilities for visualization, exploration, and predictive analysis. This review highlights the global trends in plant genomics presented at PAG XXIV by focusing on crop productivity.

Citations

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  • Drought-Tolerant Biotech Soybean Breeding in South America: Current Status, Commercialization, and Implications for Korea’s Technology Export Strategy
    Seung Young Choi, Yong Hun Song, Seung Muk Won, Kyeong Hee Lee, Ga Ram Kim, Taeyoung Um
    Korean Journal of Breeding Science.2026; 58(1): 13.     CrossRef
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