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"Hyun-Suk Cho"

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"Hyun-Suk Cho"

Research Articles
Flanking Sequence and Copy-Number Analysis of Transformation Events by Integrating Next-Generation Sequencing Technology with Southern Blot Hybridization
Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Hyun-Suk Cho, Seong-Kon Lee
Plant Breed. Biotech. 2017;5(4):269-281.   Published online December 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.4.269

With the continual development of genetically modified (GM) crops, it has become necessary to develop detailed and effective molecular characterization methods to select candidate events from a large pool of transformation events. Relative to traditional molecular analysis methods such as the polymerase chain reaction (PCR) and Southern blot hybridization, next generation sequencing (NGS) technology for whole-genome sequencing of complex crop genomes had proven comparatively useful for in-depth molecular characterization. In this study, four transformation events, including one in Bacillus thuringiensis (Bt)-resistant rice, one in resveratrol-producing rice, and two in beta-carotene-enhanced soybeans, were selected for molecular characterization. To merge NGS analysis and Southern blot-hybridization results, we confirmed the transgene insertion sites, insertion construction, and insertion numbers of these four transformation events. In addition, the read-coverage depth assessed by NGS analysis for inserted genes might provide consistent results in terms of inserted T-DNA numbers in case of complex insertion structures and highly duplicated donor genomes; however, PCR-based methods can produce incorrect conclusions. Our combined method provides an effective and complete analytical approach for whole-genome visual inspection of transformation events that require biosafety assessment.

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  • Molecular Characterization of CRISPR-Cas9-Edited Rice Across Generations and Associated Technical Challenges in Nucleotide Editing Tracing
    Yang Qin, Sang Dae Yun, Hye Lin Kim, Je Yeon Choi, Myung-Ho Lim, Sung Aeong Oh, Soon Ki Park
    Plant Breeding and Biotechnology.2025;[Epub]     CrossRef
  • Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus tauri
    Julie Thomy, Frederic Sanchez, Marta Gut, Fernando Cruz, Tyler Alioto, Gwenael Piganeau, Nigel Grimsley, Sheree Yau
    Cells.2021; 10(3): 664.     CrossRef
  • Comparative transcriptome profiling of different tissues from beta-carotene-enhanced transgenic soybean and its non-transgenic counterpart
    Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Seong-Kon Lee
    Plant Cell, Tissue and Organ Culture (PCTOC).2020; 140(2): 341.     CrossRef
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Compositional Analysis of Lentil (Lens culinaris) Cultivars Related to Colors and Their Antioxidative Activity
So-Young Lee, Yun-Soo Yeo, Soo-Yun Park, Seong-Gon Lee, Si-Myung Lee, Hyun-Suk Cho, Nam-Jin Chung, Seon-Woo Oh
Plant Breed. Biotech. 2017;5(3):192-203.   Published online September 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.3.192

Metabolite profile is a powerful analytical technique to identify the functional characterization of plants. In this study, the phytochemicals and secondary metabolites of lentils (Lens culinaris) were analyzed to compare the anti-oxidative activities according to the different colors. The polar metabolites, fatty acids, carotenoids, flavonoids, anthocyanins, total phenolic acids, DPPH activity were analyzed. Three kind of lentils, French green whole lentil (FG), red whole lentil (LR), and green whole lentil (LG) (ASIA SEED Co., LTD), were used for this study. Fatty acids, phytochemicals, and antioxidative components from each lentil varieties were analyzed by official methods. The contents of lutein in carotenoids were 6–9 times higher than zeaxanthin in all lentils, but were not significantly different among three varieties. The content of carotenoids in FG was lower significantly than those in the LR and LG. Myricetin and luteolin were detected in the only FG. Kaempferol and delphinidin were significantly highest in the FG. Most of the phenolic acids except coumarate were higher in FG and LG than in LR. Also antioxidant effects (EC50) were higher in FG and LG than in LR. The analyzed metabolites obtained from lentils showed distinct separation in the PCA results according to the varieties. Also, lentils showed different anti-oxidant profiles according to the colors. FG and LG showing higher contents of phytochemicals showed higher antioxidative activity than LG containing relative low contents of phytochemicals.

Citations

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  • One-pot green solution combustion synthesis of ZnV2O6 photo catalyst for dye degradation, Cr (VI) detoxification, phyto toxicity analysis and latent finger printing applications
    R Nalina, Udayabhanu, R. Harini, K.P. Latha, K.B. Naveen, Mohd Shkir, H.N. Shwetha, K.N. Nandeesh, G. Nagaraju
    Inorganic Chemistry Communications.2026; 189: 116650.     CrossRef
  • Microbiological and physicochemical properties of bean, lentil, and chickpea kefirs as plant-based dairy alternatives
    Seyma Gunturk, Firuze Ergin Zeren, Ahmet Kucukcetin, Emine Mine Comak Gocer
    European Food Research and Technology.2026;[Epub]     CrossRef
  • Evaluating polyphenol profile and antioxidant activity in relation to seed morphology in a collection of red lentils
    Gaetano Giudice, Lorenzo Palombi, Stefano Pavan, Marzia Guerriero, Andrea Visioni, Barbara Laddomada
    Food Bioscience.2026; 78: 108452.     CrossRef
  • COMPARATIVE ASSESSMENT OF LEGUME MILKS FOR PLANT-BASED ICE CREAM: NUTRITIONAL, FUNCTIONAL, AND TECHNOLOGICAL ASPECTS
    Elif Meltem İşçimen, Duygu Aslan Türker
    Gıda.2026; 51(1): 1.     CrossRef
  • Innovations in industrial and functional food applications of lentil in the era of biofortification
    Asish Kumar Padhy, Shiksha Chaurasia, Abinaya Manivannan, Kuldeep Tripathi, Sapna Sapna, Sabhyata Bhatia
    Discover Food.2025;[Epub]     CrossRef
  • Effect of soaking conditions on glyphosate absorption in selected pulses: understanding solvent behaviour and morphological changes
    Sindhu Sindhu, Annamalai Manickavasagan, Amanat Ali
    International Journal of Environmental Analytical Chemistry.2024; 104(19): 7855.     CrossRef
  • Lactic and propionic acid bacteria starter cultures for improved nutritional properties of pea, faba bean and lentil
    Minna Kahala, Lucia Blasco, Rina Bragge, Davide Porcellato, Hilde Marit Østlie, Thomas Rundberget, Jose Antonio Baz-Lomba, Juha-Matti Pihlava, Jarkko Hellström, Emilie Gullberg Jørgensen, Vesa Joutsjoki, Tove Gulbrandsen Devold, Anne Pihlanto
    LWT.2024; 208: 116691.     CrossRef
  • Phenolic profile of whole seeds and seed fractions of lentils and its impact on antioxidant activity
    Antonio Manco, Carmela Gerardi, Giuseppe Romano, Leone D'Amico, Antonio Blanco, Francesco Milano, Gian Pietro Di Sansebastiano, Rind Balech, Barbara Laddomada
    Food Bioscience.2023; 54: 102887.     CrossRef
  • Tissue-Specific Antioxidant Activities of Germinated Seeds in Lentil Cultivars during Thermal Processing
    Ji Hye Kim, Shucheng Duan, You Rang Park, Seok Hyun Eom
    Antioxidants.2023; 12(3): 670.     CrossRef
  • Lentil (Lens culinaris Medik.) Flour Varieties as Promising New Ingredients for Gluten-Free Cookies
    Lívia Hajas, László Sipos, Éva Csajbókné Csobod, Márta Veresné Bálint, Réka Juhász, Csilla Benedek
    Foods.2022; 11(14): 2028.     CrossRef
  • Lentil-Based Yogurt Alternatives Fermented with Multifunctional Strains of Lactic Acid Bacteria—Techno-Functional, Microbiological, and Sensory Characteristics
    Theresa Boeck, Lilit Ispiryan, Andrea Hoehnel, Aylin W. Sahin, Aidan Coffey, Emanuele Zannini, Elke K. Arendt
    Foods.2022; 11(14): 2013.     CrossRef
  • Protective effects of functional foods against Parkinson's disease: A narrative review on pharmacology, phytochemistry, and molecular mechanisms
    Milad Iranshahy, Behjat Javadi, Amirhossein Sahebkar
    Phytotherapy Research.2022; 36(5): 1952.     CrossRef
  • Genotypic and Environmental Effect on the Concentration of Phytochemical Contents of Lentil (Lens culinaris L.)
    Maria Irakli, Anastasia Kargiotidou, Evangelia Tigka, Dimitrios Beslemes, Maria Fournomiti, Chrysanthi Pankou, Kostoula Stavroula, Nektaria Tsivelika, Dimitrios N. Vlachostergios
    Agronomy.2021; 11(6): 1154.     CrossRef
  • Nutritional and Rheological Features of Lentil Protein Isolate for Yoghurt-Like Application
    Theresa Boeck, Emanuele Zannini, Aylin W. Sahin, Juergen Bez, Elke K. Arendt
    Foods.2021; 10(8): 1692.     CrossRef
  • Influence of partial pork meat replacement by pulse flour on physicochemical and sensory characteristics of low‐fat burgers
    Natalia Soledad Argel, Natalia Ranalli, Alicia Noemí Califano, Silvina Cecilia Andrés
    Journal of the Science of Food and Agriculture.2020; 100(10): 3932.     CrossRef
  • LINKAGE MAPPING OF CAROTENOID CLEAVAGE DIOXYGENASE-4 FAMILY IN LENTIL GENOME
    Duygu Ates
    Turkish Journal Of Field Crops.2018; : 167.     CrossRef
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Assessment of the Response of Beta Carotene Enhanced Transgenic Soybeans to Soybean Mosaic Virus (SMV)
Yang Qin, Kong-Sik Shin, Jang-Kyun Seo, Myung-Ho Lim, Young-Soo Chung, Hyun-Suk Cho, Seong-Kon Lee, Hee-Jong Woo
Plant Breed. Biotech. 2016;4(2):158-169.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.158

Beta-carotene, a defense chemical, is synthesized by the carotenoid biosynthesis pathway. In the present study, a transgenic soybean line, with a single copy insertion of phytoene synthase and carotene desaturase genes, having high beta-carotene content was studied for its response to systemically inoculated Soybean mosaic virus (SMV). Beta-carotene-enhanced transgenic soybean showed similar leaf and seed symptoms, viral RNA, and protein expression compared to the non-genetically modified (GM) ‘Kwangan’ control. Total antioxidant contents in the non-GM ‘Kwangan’ line were increased after SMV attack in both leaves and seeds; however, the antioxidant contents in the beta-carotene-enhanced soybean line have no significant changes. In addition, both GM and non-GM soybean were detected increased lipid hydroperoxide concentrations in leaves and seeds after SMV infection, even though they did not reach a statistical significant level. Abscisic acid (ABA) levels in beta-carotene-enhanced transgenic soybean seeds was determined 35-fold increase after SMV infections caused a lower seed germination rate and a higher SMV transmission rate to subsequent generations, compared to those of non-GM ‘Kwangan’. Thus, we concluded that the additional production of beta-carotene did not confer resistance of beta-carotene-enhanced transgenic soybean to SMV infections, but caused mass accumulations of ABA in seeds.

Citations

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  • Comparison of the Nutritional Compositions of hybrid Soybean between β–carotene Enhanced Transgenic Soybean and wild Soybean
    Sung-Dug Oh, Ye-Jin Jang, Gyeong Min Lee, Kijong Lee, Sang Jae Suh, Tae-Hoon Ryu, Soo-Yun Park
    Journal of the Korean Society of International Agricultue.2020; 32(4): 339.     CrossRef
  • Comparative transcriptome profiling of different tissues from beta-carotene-enhanced transgenic soybean and its non-transgenic counterpart
    Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Seong-Kon Lee
    Plant Cell, Tissue and Organ Culture (PCTOC).2020; 140(2): 341.     CrossRef
  • Nutritional composition analysis for beta-carotene-enhanced transgenic soybeans (Glycine max L.)
    Yang Qin, Soo-Yun Park, Seon-Woo Oh, Myung-Ho Lim, Kong-Sik Shin, Hyun-Suk Cho, Seong-Kon Lee, Hee-Jong Woo
    Applied Biological Chemistry.2017; 60(3): 299.     CrossRef
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T-DNA Inheritance Stability of Resveratrol Rice Iksan526 over Multi-generations
Yang Qin, Hong-Il Ahn, Su-Yoen Park, Myung-Ho Lim, Hee-Jong Woo, Kong-Sik Shin, Jin-Hyoung Lee, Hyun-Suk Cho, So-Hyeon Baek, Soon-Ki Park, Soon-Jong Kweon
Plant Breed. Biotech. 2014;2(3):268-275.   Published online September 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.3.268

Confirmation of T-DNA inheritance and stability requires testing of several parameters such as phenotypic performance of transgenic lines, transgene integrity structure and expression stability for at least three consecutive generations, and Mendelian inheritance analysis, which are very important to transgenic breeding and commercialization of genetically modified crops (GMOs). In the present study, we measured nine agronomic and yield-related traits of Iksan526 and confirmed stable phenotypic performance comparing to the donor variety Dongjin over three years. Transgene integrity structure, flanking sequence, functional element copy numbers, absence of backbone sequence and transgene expression were all verified in Iksan526 over three consecutive generations, indicating a stable inheritance of the transgene. In addition, phenotypic and genotypic segregation were analyzed on F2 and F3 populations derived from a cross of Dongjin/Iksan526, and results complied with Mendel’s law of segregation based on single transgene locus. This study demonstrated detailed analyses and confirmation of transgene event Iksan526 which is crucial for commercialization of GMO.

Citations

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  • Analysis of T-DNA integration events in transgenic rice
    Wankui Gong, Yun Zhou, Rui Wang, Xiaoli Wei, Lei Zhang, Yan Dai, Zhen Zhu
    Journal of Plant Physiology.2021; 266: 153527.     CrossRef
  • Genetic Stability, Inheritance Patterns and Expression Stability in Biotech Crops
    Laura Privalle, Patricia Back, Apurv Bhargava, Zach Bishop, Krystal Cisneros, Isabelle Coats, Ine Criel, Lien Dhondt, Travis Draughn, Barb Fowler, Brad Franklin, Durba Ghoshal, Jim Lor, Jennifer Massengil, Sofie Moens, Tyson Mooney, Dannyel Nelson, Karoli
    OBM Genetics.2020; 04(04): 1.     CrossRef
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Molecular Characterization of Transgenic Rice Producing Resveratrol
Yang Qin, Hong-Il Ahn, Soon-Jong Kweon, So-Hyeon Baek, Kong-Sik Shin, Hee-Jong Woo, Hyun-Suk Cho, Jin-Hyoung Lee, Myung-Ho Lim
Plant Breed. Biotech. 2013;1(4):406-415.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.406

Resveratrol, a plant phenolic compound, has potential therapeutic benefits due to its antioxidant properties. This is substantiated by previous studies that show that resveratrol derived from rice grains is an effective treatment agent for metabolic syndrome. Here, we characterized the T-DNA sequence, inserted T-DNA structure, copy number, integrity of the transgene locus, resveratrol synthase gene expression and resveratrol contents in the grains of two resveratrol transgenic rice lines, Iksan515 and Iksan526. The T-DNA transformation vector contained two expression cassettes of the resveratrol synthase gene under the control of the ubiquitin promoter and the bar selection marker gene under the control of the CaMV35S promoter. Flanking sequence analysis indicated that the T-DNAs were inserted into intergenic regions of chromosome 4 for Iksan515 and chromosome 12 for Iksan526. Two T-DNAs connected in an inverted repeat structure at a single locus of the rice genome were identified by whole genome sequencing and Southern blot hybridization in both Iksan515 and Iksan526. No novel open reading frames (ORFs) around insertion sites, sequences encoding allergenic or toxic protein, or other unintended effects by T-DNA insertion were found in either case. In addition, resveratrol synthase gene expression in leaves and resveratrol detection in brown rice grains suggested the successful expression of the inserted foreign resveratrol synthase gene in two transgenic rice lines.

Citations

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  • Assessment of potential gene flow from resveratrol-enriched genetically modified rice to non-genetically modified rice and weedy rice
    Sang Dae Yun, Sung Dug Oh, Yang Qin, Myung-Ho Lim, Hye Lin Kim, Je Yeon Choi, Eun Young Kim, Sung Aeong Oh, Seong-Kon Lee, Doh-Won Yun, Tae-Hun Ryu, Jae Kwang Kim, Soon Ki Park
    Journal of Plant Biotechnology.2025;[Epub]     CrossRef
  • Arachis hypogaea resveratrol synthase 3 alters the expression pattern of UDP-glycosyltransferase genes in developing rice seeds
    Choonseok Lee, Woo-Jong Hong, Ki-Hong Jung, Ha-Cheol Hong, Dool-Yi Kim, Hyun-Choong Ok, Man-Soo Choi, Soo-Kwon Park, Jaehyun Kim, Hee-Jong Koh, Sara Amancio
    PLOS ONE.2021; 16(1): e0245446.     CrossRef
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Bioassay for the Response of Resveratrol Transgenic Rice Lines to Bacterial and Fungal Diseases
Yang Qin, Suk-Man Kim, Hong-Il Ahn, Jin-Hyoung Lee, So-Hyeon Baek, Kong-Sik Shin, Hee-Jong Woo, Hyun-Suk Cho, Soon-Jong Kweon, Myung-Ho Lim
Plant Breed. Biotech. 2013;1(3):253-261.   Published online September 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.3.253

Resveratrol is a stilbenoid and phytoalexin produced in response to stresses, such as wounding, and pathogen attacks by bacteria or fungi. Two resveratrol rice lines, Iksan515 and Iksan526, were used to examine resistance against Korean pathogen races for bacterial blight, leaf blast, and brown leaf spot. The screening test for bacterial blight demonstrated an increased susceptibility of both transgenic lines to K1 race, and a more susceptible Iksan515 to K2. Phenotypic evaluation for resistance to brown leaf spot also revealed the susceptibility of Iksan526 to the disease which did not significantly differ from the isogenic variety ‘Dongjin’, and a slightly more susceptible Iksan515 to the disease compared to check. When the lines were screened with three races (KJ301, KJ101 and KJ133) of leaf blasts in the field, both transgenic lines exhibited resistance but at the same level with ‘Dongjin’. Our overall findings suggest that foreign phytoalexin resveratrol production in transgenic rice lines transformed with resveratrol synthase gene did not confer resistance against fungal and bacterial diseases.

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  • Effect of genetically modified rice producing resveratrol on the soil microbial communities
    Soo-In Sohn, Young-Ju Oh, Byung-Yong Kim, Soon-Jong Kweon, Hyun-Suk Cho, Tae-Hoon Ryu
    Journal of the Korean Society for Applied Biological Chemistry.2015; 58(6): 795.     CrossRef
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