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Volume 8(1); March 2020

Research Articles
Phenolic Compound Content of Leaf Extracts from Different Roselle (Hibiscus sabdariffa) Accessions
Jae Il Lyu, Jung Min Kim, Dong-Gun Kim, Jin-Baek Kim, Sang Hoon Kim, Joon-Woo Ahn, Si-Yong Kang, Jaihyunk Ryu, Soon-Jae Kwon
Plant Breed. Biotech. 2020;8(1):1-10.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.1

The leaves of roselle (Hibiscus sabdariffa L.) have been used as a traditional folk medicine that has diuretic and mild laxative effects. Roselle is cultivated in many countries for medicines and food. However, studies on the variation of functional compounds in different accessions are relatively limited. In this study, we investigated the phenolic compound content of leaf extracts from 49 different roselle accessions from a worldwide collection by ultra-high performance liquid chromatography mass spectrometry. The aim was to chemically classify and assess the pharmacological properties of the phenolic compounds in the leaves. The phenolic compounds were identified as neochlorogenic acid, cryptochlorogenic acid, rutin, rutin isomer, isoquercitin, kaempferol-3-O-rutinoside, kaempferol-3-O-glucoside, quercetin, quercetin isomer, and kaempferol. These compounds were present at significantly different levels among the accessions. The most abundant phenolic compound was rutin, which was found in 45 accessions where the total phenolic compound content was 18.75-46.51 mg/g (average 31.52 mg/g). The phenolic compounds were classified into four groups. The two accessions with the highest total phenolic compound content were from Ghana (PI286316) and Senegal (PI275413). The hierarchical cluster analysis of the 49 roselle accessions showed that they formed five groups according to their phenolic compound content. Our results will be useful for the selection of roselle genotypes with improved functional compounds.

Citations

Citations to this article as recorded by  
  • Metabolomic Profiling of Taiwanese Roselle (Hibiscus sabdariffa) Leaves and Their Antiproliferative and Insulin Resistance-Ameliorating Potential
    Yu-Hung Liao, Jing-Wen Chen, Yu-Chia Chang, San-Chi Chang, Chun-Han Su
    Foods.2026; 15(10): 1696.     CrossRef
  • Optimisation of the Extraction Process and Quality Attributes of a Roselle (Hibiscus sabdariffa L.) Leaf Tisane Beverage
    Izalin Zahari, Norra Ismail, Muhammad Shafiq Johari, Norhartini Abdul Samad
    Processes.2026; 14(2): 318.     CrossRef
  • Applicability of Hibiscus sabdariffa L. Extract With Anti‐Inflammatory Potential in Human Health: A Review
    Anne Caroline Silva Nogueira da Cruz, Michelline Joana Tenório Albuquerque Madruga Mesquita, Guilherme kauan Rocha Dantas, Eduardo Rodrigues Silva, Victória Carvalho Falcone De Oliveira, Heitor Martins Rezende, Gustavo Medeiros Frota, Mariana Cavalcante,
    Food Science & Nutrition.2025;[Epub]     CrossRef
  • Enhancement of physicochemical, microbiological, and sensory properties of oil cake fortified with wheat bran, α-amylase microcapsules, and Roselle extract nano-emulsions during storage
    Golnaz Soltani, Alireza Rahman, Lida Shahsavani Mojarad, Touraj Rahimi
    LWT.2025; 218: 117491.     CrossRef
  • Bioprocess strategies for maximizing SCOBY growth and evaluating fermentation dynamics on phenolic content and antioxidant activity in Roselle-based Kombucha
    Widiastuti Setyaningsih, Wa Ode Reza Sindy Warni, Intan Dewi Larasati, Rini Yanti, Tyas Utami
    Phytomedicine Plus.2025; 5(2): 100791.     CrossRef
  • Hibiscus sabdariffa L. (Roselle flower) extract exerts protective effects against lipopolysaccharide-induced inflammation by ameliorating TLR4/NF-κB and NLRP3 inflammasome activation
    Narongsuk Munkong, Atcharaporn Ontawong, Natthaphon Thatsanasuwan, Sirinat Pengnet, Jiradej Makjaroen, Phorutai Pearngam, Saharat Nanthawong, Poorichaya Somparn, Natnisha Leelahavanichkul, Arthid Thim-uam
    Inflammopharmacology.2025; 33(7): 4077.     CrossRef
  • Optimization of Ultrasound-Assisted Cold-Brew Method for Developing Roselle (Hibiscus sabdariffa L.)-Based Tisane with High Antioxidant Activity
    Intan Dewi Larasati, Nurul Mutmainah Diah Oktaviani, Hanifah Nuryani Lioe, Teti Estiasih, Miguel Palma, Widiastuti Setyaningsih
    Beverages.2023; 9(3): 58.     CrossRef
  • Heating effect on nutritional value from two morphotypes (palmate and semi-palmate leaves) of Hibiscus sabdariffa
    Antoine Sambou, Nicolas Ayessou, Aly Diallo
    International Journal of Gastronomy and Food Science.2023; 32: 100698.     CrossRef
  • Chemical constituents fromHibiscus hamaboand their antiphotoaging effects onUVA‐inducedCCD‐986sk
    Gwee Kyo Park, Wookju Jang, Bo Yun Kim, Kyung‐Eon Oh, You Ah. Kim, Hyuk Joon Kwon, Soo‐Young Kim, Byoung Jun Park
    Bulletin of the Korean Chemical Society.2022; 43(5): 668.     CrossRef
  • Health‐promoting foods and food crops ofWest‐Africaorigin: The bioactive compounds and immunomodulating potential
    James Ayokunle Elegbeleye, Srinivasan Krishnamoorthy, Oluwaseun Peter Bamidele, Adeyemi A. Adeyanju, Olalekan J. Adebowale, Wisdom Selorm Kofi Agbemavor
    Journal of Food Biochemistry.2022;[Epub]     CrossRef
  • Phenolic Compounds from Leaves and Flowers of Hibiscus roseus: Potential Skin Cosmetic Applications of an Under-Investigated Species
    Luana Beatriz dos Santos Nascimento, Antonella Gori, Andrea Raffaelli, Francesco Ferrini, Cecilia Brunetti
    Plants.2021; 10(3): 522.     CrossRef
  • Phenolic Compounds in Extracts of Hibiscus acetosella (Cranberry Hibiscus) and Their Antioxidant and Antibacterial Properties
    Jae Il Lyu, Jaihyunk Ryu, Chang Hyun Jin, Dong-Gun Kim, Jung Min Kim, Kyoung-Sun Seo, Jin-Baek Kim, Sang Hoon Kim, Joon-Woo Ahn, Si-Yong Kang, Soon-Jae Kwon
    Molecules.2020; 25(18): 4190.     CrossRef
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Cold Hardiness of 8 Hybrid Poplar Clones for the Introduction to Arid and Semi-Arid Areas
Wonwoo Cho, Romika Chandra, Songhee Lee, Jiwon Han, Sora Lee, Ganchudur Tsetsegmaa, Khaulenbek Akhmadi, Wiyoung Lee, Hoduck Kang
Plant Breed. Biotech. 2020;8(1):11-18.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.11

Endodormancy is a key determinant of cold and freezing hardiness in plant cycles. Short plant growth periods and increasing frequencies of frosting caused by increasing temperatures are major environmental challenges faced by trees in arid areas of central Mongolia. In the present study, the primary aim was to determine an effective method for cold hardiness with the use of six introduced and two Mongolian poplar clones. The secondary aim was selecting clones suitable for afforestation in Mongolia. Year old branches were subjected to four temperature treatments to induce cold hardiness. Electrolyte leakage, 2,3,5-triphenyltetrazolium chloride (TTC) reduction, leaf sprouting, and leaf browning rates were compared. High rates of electrolyte leakage and browning rates were observed along with low leaf sprouting at a low-temperature of ‒30°C. Temperatures between ‒25°C and ‒30°C damaged certain clones more than others. TTC reduction rate method for determining cold hardiness was considered effective in this case. In addition, Mongolian poplar P. sibirica differed distinctly from other poplar clones owing to the difference in dormancy-breaking whereas DN 247 and DN sim were better adapted to cold hardiness based on TTC reduction rate. These findings suggest that factors such as plant dormancy depth and physiological differences might significantly affect productivity and performance among plants. Evidently, further studies are required using other plant parts for selecting suitable poplar clones.

Citations

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  • Analyzing Pollen Fertility Based on Micronuclei Presence in Yellow Aneuploid Phalaenopsis
    Samantha Serafin Sevilleno, Raisa Aone M. Cabahug-Braza, Hye Ryun An, Yoon-Jung Hwang
    Korean Journal of Breeding Science.2023; 55(4): 287.     CrossRef
  • Response of citrus to freezing tolerance differs depending on genotypes and growing conditions
    Misun Kim, Seok Kyu Yun, Sang Suk Kim, YoSup Park, Jaeho Joa, Seunggab Han, Kihye Shin, Kwan Jeong Song
    Horticulture, Environment, and Biotechnology.2021; 62(2): 181.     CrossRef
  • Standardization of electrolyte leakage data and a novel liquid nitrogen control improve measurements of cold hardiness in woody tissue
    Alisson P. Kovaleski, Jake J. Grossman
    Plant Methods.2021;[Epub]     CrossRef
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Identification of Rice Mutants with Altered Grain Alkali Digestion Trait
HyunJung Kim, Ralph Vin B. Imatong, Thomas H. Tai
Plant Breed. Biotech. 2020;8(1):19-27.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.19

Gelatinization temperature (GT) is an important component of eating and cooking quality (ECQ) of rice. While direct measurement of GT is cumbersome, the alkali spreading value (ASV) test is a robust method commonly used to rapidly identify different GT types. In this study, we employed a modified ASV assay to screen a population of chemically-induced rice (cv. Kitaake) mutants (n = 405). Two mutant families, KDS-1623B and KDS-1824B, with significantly lower ASV (higher GT type) than wild type Kitaake (low GT type) were isolated. A nonsynonymous homozygous mutation in the isoamylase-type starch debranching enzyme gene ISA1 was identified in KDS-1623B. The mutation (G2709T) is predicted to change a valine at position 354 to a leucine in the α-amylase catalytic domain of ISA1. This result is consistent with the shrunken endosperm exhibited by KDS-1623B grains and the replacement of starch with phytoglycogen in isa1 (sugary-1) mutants. The altered ASV trait in KDS-1824B appears to be controlled by a single recessive mutation; however, the causal genetic lesion remains to be determined. These mutants will be useful resources for elucidating the complex nature of starch metabolism and its influence on ECQ of rice.

Citations

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  • Identification of a novel mutant allele of the LIKE EARLY STARVATION 1 gene in rice (Oryza sativa L.) using QTL-seq
    Kyu-Chan Shim, HyunJung Kim, Mi-Ra Yoon, Sung-Ho Na, Sa-Eun Park, Sang-Nag Ahn, Thomas H Tai, J Holland
    G3: Genes, Genomes, Genetics.2026;[Epub]     CrossRef
  • Efficient identification of palatability-related genes using QTL mapping in rice breeding
    Yoon-Hee Jang, Jae-Ryoung Park, Eun-Gyeong Kim, Rahmatullah Jan, Saleem Asif, Muhammad Farooq, Dan-Dan Zhao, Kyung-Min Kim
    Molecular Breeding.2023;[Epub]     CrossRef
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Genome-Wide Characterization and Expression Profiling of Plant-Specific PLATZ Transcription Factor Family Genes in Brassica rapa L.
Jaber Bin Azim, Md. Fahim Hassan Khan, Lutful Hassan, Arif Hasan Khan Robin
Plant Breed. Biotech. 2020;8(1):28-45.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.28

Plant AT-rich sequence and zinc-binding (PLATZ) proteins constitute a plant-specific transcription factor family with two conserved zinc-dependent DNA-binding domains. The PLATZ proteins operate significant functions in regulating plant development and resistance. To date, PLATZ genes have been studied only in a few model plants, including Arabidopsis, rice, maize and soybean, but not yet in any Brassica species. We identified 24 Brassica rapa PLATZ gene family (BrPLATZ) genes through genome-wide characterization and profiled their expression using available RNA-Sequencing data. We divided 153 PLATZ proteins from eight plant species into seven groups based on sequence alignment and phylogeny. The BrPLATZ genes were generally conserved in groups with similar motif and exon-intron distribution. The 24 BrPLATZ genes were located in eight of the ten B. rapa chromosomes, with segmental duplication detected in 20 paralogs. Analysis of Ka/Ks ratios revealed that the duplicated genes were under purifying selection. Cis-elements analysis implied that BrPLATZ genes are diverse in functions including tissue-specific, stress and hormone responsive expressions. Furthermore, expression profiling based on RNA-sequencing data revealed that the BrPLATZ genes were expressed in various tissues, with most genes preferentially expressed in flower and silique compared to other tissues. Systematic analysis revealed structural and functional diversity among BrPLATZ proteins, which indicated the possibility of diverse functions of BrPLATZ genes in development and stress resistance. The characterization of PLATZ gene family members may aid in the selection of appropriate candidate genes responsible for biological functions in B. rapa and relevant species.

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  • Molecular profiling of PLATZ gene family in pepper (Capsicum annuum L.) and overexpression of CaPLATZ6 confers enhanced resistance to anthracnose pathogen, Colletotrichum truncatum L.
    Swarna Manjari Mishra, Sravya Sruti Tamarapalli, Rukmini Mishra, Raj Kumar Joshi
    Physiological and Molecular Plant Pathology.2025; 138: 102700.     CrossRef
  • Genome-wide characterization of monoacylglycerol lipase (MAGL) gene family in soybean and functional analysis of GmMAGLs in storage lipid metabolism and drought resistance
    Haiqing Jing, Yan Sun, Bicheng Wang, Juhua Ma, Kun Wan, Zhanqian Li, Yali Zhou, Runzhi Li, Haiping Zhang, Jinai Xue
    BMC Genomics.2025;[Epub]     CrossRef
  • PLATZ transcription factors gene family in Brassica napus: genome-wide identification and expression analysis to abiotic stresses
    Sana Basharat, Pingwu Liu, Muhammad Waseem
    BMC Genomics.2025;[Epub]     CrossRef
  • RcPLATZ8 as a novel negative regulator of flowering in Rosa chinensis
    Yifang Peng, Qi Li, Yao Gong, Qian Yang, Qijing Dong, Yu Han
    Plant Cell Reports.2025;[Epub]     CrossRef
  • Exploring the Roles of the Plant AT-Rich Sequence and Zinc-Binding (PLATZ) Gene Family in Tomato (Solanum lycopersicum L.) Under Abiotic Stresses
    Bei Fan, Min Ren, Guoliang Chen, Xue Zhou, Guoting Cheng, Jinyu Yang, Huiru Sun
    International Journal of Molecular Sciences.2025; 26(4): 1682.     CrossRef
  • Genome-Wide Identification of CaPLATZ Family Members in Pepper and Their Expression Profiles in Response to Drought Stress
    Xingliang Wang, Yue Huang, Na Yang, Xue Wang, Yuanqian Wang, Wenyao Ma, Hui Zhang
    Genes.2025; 16(6): 632.     CrossRef
  • Genome wide identification and characterization of EPFL genes and its potential association with male sterility in Brassica rapa
    Kang Wang, Yongkang Wang, Xiaoyan Tang, Na Liao, Danni Yang, Wenjie Wang, Lingyun Yuan, Jinfeng Hou, Jianqiang Wu, Chenggang Wang, Guohu Chen
    Scientific Reports.2025;[Epub]     CrossRef
  • PLATZ transcription factors and their emerging roles in plant responses to environmental stresses
    Hongxia Zhang, Lu Liu, Zhenzhen Li, Shuo Wang, Li Huang, Sue Lin
    Plant Science.2025; 352: 112400.     CrossRef
  • Genome-wide analysis of the PLATZ gene family provides insights into the genome evolution of cultivated peanut (Arachis hypogaea, Leguminosae)
    Sergio Sebastián Samoluk, Guillermo Seijo
    Genetic Resources and Crop Evolution.2025; 72(4): 4809.     CrossRef
  • PLATZ transcription factors: Roles in plant growth, development, and stress adaptation
    Shanshan Zeng, Leeza Tariq, Yan Bi, Mengmeng Guo, Hui Wang, Fengming Song
    Plant Stress.2025; 18: 101075.     CrossRef
  • Genome-Wide Analysis of the PLATZ Gene Family and Identification of Seed Development-Related Genes in Flax [ Linum usitatissimum L.]
    Jing Li, Wei He, Zhigang Dai, Dongwei Xie, Jian Sun
    Journal of Natural Fibers.2024;[Epub]     CrossRef
  • GhiPLATZ17 and GhiPLATZ22, zinc-dependent DNA-binding transcription factors, promote salt tolerance in upland cotton
    Abdul Rehman, Chunyan Tian, Xiawen Li, Xiaoyang Wang, Hongge Li, Shoupu He, Zhen Jiao, Abdul Qayyum, Xiongming Du, Zhen Peng
    Plant Cell Reports.2024;[Epub]     CrossRef
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    Dongwei Xie, Jing Li, Wan Li, Lijun Sun, Zhigang Dai, Wenzhi Zhou, Jianguang Su, Jian Sun
    Journal of Integrative Agriculture.2024; 23(3): 795.     CrossRef
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    Marie Baucher, Claire Guérin, Mondher El Jaziri, Marc Behr
    Critical Reviews in Plant Sciences.2024; 43(5): 376.     CrossRef
  • Identification and Functional Characterization of Abiotic Stress Tolerance-Related PLATZ Transcription Factor Family in Barley (Hordeum vulgare L.)
    Kangfeng Cai, Xiujuan Song, Wenhao Yue, Lei Liu, Fangying Ge, Junmei Wang
    International Journal of Molecular Sciences.2024; 25(18): 10191.     CrossRef
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    International Journal of Biological Macromolecules.2023; 248: 125959.     CrossRef
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    Jiuyang Li, Yongliang Zhao, Yaohui Zhang, Feng Ye, Zhengcun Hou, Yuhang Zhang, Longjie Hao, Guofang Li, Jianzhu Shao, Ming Tan
    BMC Genomics.2023;[Epub]     CrossRef
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    Sampath Kumar Banoth, Harsh Chauhan
    Journal of Plant Growth Regulation.2023; 42(11): 7294.     CrossRef
  • Identification of PLATZ genes in Malus and expression characteristics of MdPLATZs in response to drought and ABA stresses
    Yaqiang Sun, Yunxiao Liu, Jiakai Liang, Jiawei Luo, Fan Yang, Peien Feng, Hanyu Wang, Bocheng Guo, Fengwang Ma, Tao Zhao
    Frontiers in Plant Science.2023;[Epub]     CrossRef
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    Lifang Zhang, Tao Yang, Zepeng Wang, Fulin Zhang, Ning Li, Weijie Jiang
    Plants.2023; 12(14): 2632.     CrossRef
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    Xin Han, Hao Rong, Yating Tian, Yanshu Qu, Meng Xu, Li-an Xu
    Frontiers in Plant Science.2022;[Epub]     CrossRef
  • Comprehensive Genome-Wide Analysis and Expression Pattern Profiling of PLATZ Gene Family Members in Solanum Lycopersicum L. under Multiple Abiotic Stresses
    Antt Htet Wai, Md Mustafizur Rahman, Muhammad Waseem, Lae-Hyeon Cho, Aung Htay Naing, Jong-Seong Jeon, Do-jin Lee, Chang-Kil Kim, Mi-Young Chung
    Plants.2022; 11(22): 3112.     CrossRef
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    Jing Li, Shan Feng, Yuchuan Zhang, Lei Xu, Yan Luo, Yuhao Yuan, Qinghua Yang, Baili Feng
    BMC Plant Biology.2022;[Epub]     CrossRef
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    Júlio Cesar F. Elias, Maria Celeste Gonçalves-Vidigal, Andrea Ariani, Giseli Valentini, Maria da Conceição Martiniano-Souza, Mariana Vaz Bisneta, Paul Gepts
    Plants.2021; 10(8): 1572.     CrossRef
  • Genome‐wide analysis of genomic imprinting in the endosperm and allelic variation in flax
    Haixia Jiang, Dongliang Guo, Jiali Ye, Yanfang Gao, Huiqing Liu, Yue Wang, Min Xue, Qingcheng Yan, Jiaxun Chen, Lepeng Duan, Gongze Li, Xiao Li, Liqiong Xie
    The Plant Journal.2021; 107(6): 1697.     CrossRef
  • Integrative analysis of metabolome and transcriptome reveals molecular regulatory mechanism of flavonoid biosynthesis in Cyclocarya paliurus under salt stress
    Lei Zhang, Zijie Zhang, Shengzuo Fang, Yang Liu, Xulan Shang
    Industrial Crops and Products.2021; 170: 113823.     CrossRef
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    H. Busra Cagirici, Hikmet Budak, Taner Z. Sen
    Scientific Reports.2021;[Epub]     CrossRef
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Increasing New Root Length Reflects Survival Mechanism of Rice (Oryza sativa L.) Genotypes under PEG-Induced Osmotic Stress
Afsana Hannan, Lutful Hassan, Md. Najmol Hoque, Md. Tahjib-Ul- Arif, Arif Hasan Khan Robin
Plant Breed. Biotech. 2020;8(1):46-57.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.46

Rice is globally one of the most important cereal crops that faces osmotic stress under any kind of abiotic stresses. An experiment was conducted under controlled condition to study the effects of polyethylene glycol (PEG) induced osmotic stress on root and root hair morphology and associated biochemical traits in four morphologically diverse rice genotypes. Plants were grown hydroponically. Two treatments, 0% (control) and 5% PEG 6000 (w/v), were imposed on 38 days old plants for 17 days’ duration. Main root axis length at first three youngest root bearing phytomers (Pr1-Pr3) was increased in Binadhan-11 but decreased in Binadhan-7 and BRRI dhan 71 under 5% PEG treatment compared to control. This result indicated that Binadhan-11 increased new root length perhaps to explore stress free environment. Length of L-type first order lateral root was also significantly increased by 2.03 fold in Binadhan-11 under 5% PEG treatment compared to control. Density and length of root hairs were increased at first order lateral roots in Binadhan-11 under 5% PEG treatment compared to control treatment those contributed largely to root surface area. Measurements of H2O2 and MDA revealed that Binadhan-11 was less affected by the oxidative damage caused by PEG. Data provides insight into the root morphological plasticity of four morphologically diverse rice varieties under PEG-induced osmotic stress.

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    Md. Najmol Hoque, Afsana Hannan, Shahin Imran, Newton Chandra Paul, Md. Fuad Mondal, Md. Mahabubur Rahman Sadhin, Jannatul Mawa Bristi, Fariha Shahid Dola, Md. Abu Hanif, Wenxiu Ye, Marian Brestic, Mohammad Saidur Rhaman
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    Takalani Mulaudzi, Gershwin Sias, Mulisa Nkuna, Nzumbululo Ndou, Kaylin Hendricks, Vivian Ikebudu, Abraham J. Koo, Rachel F. Ajayi, Emmanuel Iwuoha
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    Meihua Liu, Mengjiao Shi, Haili Gao, Yu Zheng, Lita Yi
    Forests.2023; 14(6): 1264.     CrossRef
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    Philisiwe Felicity Mhlanga, Shakira Shaik
    South African Journal of Botany.2023; 159: 290.     CrossRef
  • Relative contribution of different members of OsDREB gene family to osmotic stress tolerance in indica and japonica ecotypes of rice
    K. Chakraborty, P. Jena, S. Mondal, G. K. Dash, S. Ray, M. J. Baig, P. Swain
    Plant Biology.2022; 24(2): 356.     CrossRef
  • Comparative analysis of drought-responsive physiological and transcriptome in broomcorn millet (Panicum miliaceum L.) genotypes with contrasting drought tolerance
    Yuhao Yuan, Long Liu, Yongbin Gao, Qinghua Yang, Kongjun Dong, Tianpeng Liu, Baili Feng
    Industrial Crops and Products.2022; 177: 114498.     CrossRef
  • Application of consecutive polyethylene glycol treatments for modeling the seminal root growth of rice under water stress
    Pepi Nur Susilawati, Ryosuke Tajima, Yuti Giamerti, Yi Yang, Muhammad Prama Yufdy, Iskandar Lubis, Koki Homma
    Scientific Reports.2022;[Epub]     CrossRef
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    Manokari M, Priyadharshini S, Cokulraj M, Jayaprakash K, Abhijit Dey, Mohammad Faisal, Abdulrahman A. Alatar, Anshu Alok, Mahipal S. Shekhawat
    South African Journal of Botany.2022; 146: 897.     CrossRef
  • Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling Stage
    Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Jalal Uddin Ahmed, Akbar Hossain, Mohamed M. Hassan, Mohammad Golam Mostofa
    Plants.2021; 10(5): 879.     CrossRef
  • PEG-Induced Osmotic Stress Alters Root Morphology and Root Hair Traits in Wheat Genotypes
    Arif Hasan Khan Robin, Shatabdi Ghosh, Md. Abu Shahed
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Genetic and Phenotypic Characterization of Rice Backcrossed Inbred Sister Lines of Saltol in Temperate Saline Reclaimed Area
Jae-Hyuk Han, Na-Hyun Shin, Je-Hoon Moon, Changhwan Yi, Soo-Cheul Yoo, Joong Hyoun Chin
Plant Breed. Biotech. 2020;8(1):58-68.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.58

Saltol is one of the most well-known quantitative loci (QTLs) for salinity tolerance in rice. It has been used to develop highly tolerant rice varieties in saline and coastal areas in Southeast Asia, South Asia, and Africa. However, the functional activity of Saltol is not well known, and the molecular marker application of readily developed linked markers in Saltol has not always been successful in the rice breeding programs for salinity tolerance improvement. Interestingly, two BC2F9 sister backcrossed inbred lines (BILs), which have been developed by marker-assisted backcrossing utilized the linked markers of Saltol to improve the salinity tolerance of MS11 (a temperate japonica growing in tropical condition). The BILs showed very different phenotypic and stress tolerance, although both contained the Saltol QTL. The genomic similarity of the two BILs was 73%, and we have identified the genomic sites of different genic constitutions between the lines utilizing background genotyping. The stress response of the two BILs showed difference in survival rate, grain yield under highly saline field condition, and SPAD, SES in hydroponic conditions. MS11-SaltolA showed salinity tolerance through Na+/K+ homeostasis with relatively high K+ ion uptake and low Na+ ion uptake in the seedling stage. Further genomic analyses with whole genome resequencing is ongoing to study on gene interactions. The developed highly tolerant MS11-SaltolA can be used as an improved donor in rice molecular breeding for high salinity tolerance.

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  • Chromosome-level genome assembly of IR64 near-isogenic line harboring Saltol reveals novel genomic regions associated with salinity tolerance in rice (Oryza sativa L.)
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QTL Analysis for Fe and Zn Concentrations in Rice Grains Using a Doubled Haploid Population Derived from a Cross Between Rice (Oryza sativa) Cultivar 93-11 and Milyang 352
So-Myeong Lee, Ju-Won Kang, Ji-Yoon Lee, Jeonghwan Seo, Dongjin Shin, Jun-Hyeon Cho, Sumin Jo, You-Chun Song, Dong-Soo Park, Jong-Min Ko, Hee-Jong Koh, Jong-Hee Lee
Plant Breed. Biotech. 2020;8(1):69-76.   Published online March 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.1.69

Biofortification is a cost-effective method for increasing the availability of micronutrients. Rice breeding for high levels of micronutrients is one of the best approaches to solve the problem of malnutrition. In this study, we developed a doubled haploid (DH) population derived from a cross between the rice cultivars 93-11 and Milyang 352 and evaluated QTLs for grain micronutrients and grain shape. Two co-localized QTLs, qFe3-1 and qZn3-1, were identified in the interval between ah03002520 and cmb0336.5 on chromosome 3, which explained 17.6% and 10.5% of the phenotypic variation, respectively. Correlation analysis between agronomic and micronutrient traits showed positive correlations between grain Fe and Zn contents but a negative correlation between grain Fe content and length-to-width ratio. This indicated the possibility of simultaneously increasing both Fe and Zn content in rice grains for improving the micronutrient profile of rice. We selected some promising lines by recombinant selection using linked markers on chromosome 3. The co-localized QTLs qFe3-1 and qZn3-1 might be useful for the improvement of biofortified rice breeding by marker-assisted selection and gene pyramiding.

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  • Deciphering the genetic basis of agronomic, yield, and nutritional traits in rice (Oryza sativa L.) using a saturated GBS-based SNP linkage map
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    Scientific Reports.2024;[Epub]     CrossRef
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    P. Senguttuvel, Padmavathi G, Jasmine C, Sanjeeva Rao D, Neeraja CN, Jaldhani V, Beulah P, Gobinath R, Aravind Kumar J, Sai Prasad SV, Subba Rao LV, Hariprasad AS, Sruthi K, Shivani D, Sundaram RM, Mahalingam Govindaraj
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  • Genome-wide association study (GWAS) with high-throughput SNP chip DNA markers identified novel genetic factors for mesocotyl elongation and seedling emergence in rice (Oryza sativa L.) using multiple GAPIT models
    Nkulu Rolly Kabange, Simon Alibu, Youngho Kwon, So-Myeong Lee, Ki-Won Oh, Jong-Hee Lee
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    Agriculture.2021; 11(6): 565.     CrossRef
  • Transcriptional Changes in the Developing Rice Seeds Under Salt Stress Suggest Targets for Manipulating Seed Quality
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