Rice is the main staple food of Indonesian people. Not only in Indonesia but also in more than half of the world’s population is considered rice as the main food in the lived of people (Sala
There are two types of rice, it is lowland and upland rice. Lowland rice needs water during its growth, so it is must be always waterlogged especially in several critical phases which need a lot of water. Upland rice is the type of rice that can grow well in a dry land, but it has low production of yields when compared to lowland rice production (Mulyaningsih and Indrayani 2014). Cibogo varieties have an IR64 genetic background which is widely used by farmers because it can provide high yields (Sitaresmi
Genetic variability has a very important role in the assembly of varieties (Saragih and Wirnas 2019). Vari-ability in a population under the same cropping environ-ment indicates there are differences in the genotypes of individual plants. Gene action is the role of a gene to express a certain trait. Gene action and the number of genes that control traits can be known by calculating the value of skewness and kurtosis (Nachimuthu
The research was conducted in August-December 2020 at Greenhouse of the Faculty of Agriculture, Brawijaya Universitas. The research was conducted using F4 and F5 generation of rice from the crossing of Situ Bagendit with Cibogo varieties (SB × CB) which obtained from hybridi-zation in the research of Adiredjo
Explanation:
GCV = genetic coefficient of variance
The estimate of heritability was calculated by using the following formula, according to (Janick 2008):
Explanation:
Analysis of gene action and total gens are known by calculating the value of skewness and kurtosis using Statistical Product and Service Solutions (SPSS) v16 software.
The results showed that low estimates of genotype coefficient of variance (GCV) were observed for the trait of date to flowering and date to harvesting, moderate estimates were observed for the trait of total productive tillers, whereas high estimates were observed for trait number of fertile grains and total grains (Table 1). The estimate of GCV is divided into 3 categories,
Table 1 . Genotype coefficient of variance and heritability of several traits in F4 and F5 generation.
Traitsz) | Generation | GCV (%)y) | Categories | H2x) | Categories |
---|---|---|---|---|---|
PT | F4 | 11.8 | Moderate | 0.3 | Moderate |
PT | F4 | 11.8 | Moderate | 0.3 | Moderate |
F5 | 14.7 | Moderate | 0.3 | Moderate | |
DF (days) | F4 | 5.4 | Narrow | 0.8 | High |
F5 | 2.8 | Narrow | 0.5 | High | |
DH (days) | F4 | 2.4 | Narrow | 0.4 | Moderate |
F5 | 1.2 | Narrow | 0.2 | Moderate | |
NFG | F4 | 26.4 | Wide | 0.4 | Moderate |
F5 | 24.3 | Wide | 0.2 | Moderate | |
TG | F4 | 20.4 | Wide | 0.2 | Moderate |
F5 | 26.6 | Wide | 0.4 | Moderate |
z)PT: productive tillers, FA: date to flowering, HA: date to harvesting, TPG: number of fertile grains, TG: total grains.
y)GCV: genetic coefficient of variance.
x)H2: heritability in a broad sense.
The results showed that moderate heritability was observed for all traits, except for trait date to flowering showed high heritability. The estimates of heritability show the proportion of genetic and environmental roles in influencing the appearance of traits. The estimate of heritability is presented in the numbers range of 0-1, greater genetic role indicates by higher heritability. Mode-rate to high heritability indicates the variability was influ-enced by genetic factors. The estimate of heritability is divided into 3 categories,
The estimate of GCV and heritability showed decreases in all traits in the F5 generation compared to the F4 generation, except for traits total productive tillers and total grains showed increased. The decrease of GCV in the F5 generation indicates selection will be effective.
The study of the distribution of quantitative traits showed non-normal distribution, which is indicated by the slope of the curve skewed to the right and left. All traits showed platykurtic distribution, it is indicated by the peak of distribution are flatter than the normal distribution (Fig. 1). By knowing the skewness and kurtosis of traits it will provide information about genetic action and the number of genes controlling the traits.
The results showed traits such as total productive tillers, date to flowering in the F4 generation, date to harvesting in the F4 generation, number of fertile grains in the F4 generation, and total grains in the F5 generation were observed negative skewness. Positive skewness was observed for trait date to flowering in the F5 generation, date to harvesting in the F5 generation, number of fertile grains in the F5 generation, and total grains in the F4 generation. All traits showed kurtosis < 3. The statistical test of Z skewness and kurtosis showed all traits were observed not significantly different (Table 2).
Table 2 . The value of skewness and kurtosis for several quantitative traits in rice.
Traitz) | Generation | Sky) | Zs | Gene Actionx) | Kcw) | Zkv) | Number of Genes |
---|---|---|---|---|---|---|---|
PT | F4 | ‒0.43 | ‒1.23tn | AD + DE | ‒0.66 | ‒0.96ns | Polygenic |
F5 | ‒0.06 | ‒0.17tn | AD + DE | ‒0.12 | ‒0.17ns | Polygenic | |
DF (days) | F4 | ‒0.06 | ‒0.17tn | AD + DE | ‒1.12 | ‒1.62ns | Polygenic |
F5 | 0.32 | 0.91tn | AD + KE | ‒0.26 | ‒0.38ns | Polygenic | |
DH (days) | F4 | ‒0.41 | ‒1.17tn | AD + DE | ‒0.93 | ‒1.35ns | Polygenic |
F5 | 0.17 | 0.49tn | AD + KE | ‒0.52 | ‒0.75ns | Polygenic | |
NFG | F4 | ‒0.32 | ‒0.91tn | AD + DE | 0.09 | 0.13ns | Polygenic |
F5 | 0.37 | 1.1tn | AD + KE | ‒0.56 | ‒0.81ns | Polygenic | |
TG | F4 | 0.19 | 0.54tn | AD + KE | 1.12 | 1.62ns | Polygenic |
F5 | ‒0.08 | ‒0.23tn | AD + DE | ‒0.65 | ‒0.94ns | Polygenic |
z)PT: productive tillers, FA: date to flowering, HA: date to harvesting, TPG: number of fertile grains, TG: total grains.
y)Sk: the value of skewness.
x)AD: additive, DE: duplicate epistasis, KE: komplementer epistasis.
w)Kc: the value of kurtosis.
v)Zk: the statistical of Z skewness and kurtosis, ns: not significant.
A low estimate of GCV indicates there is no difference in the gene composition of these traits, it concludes the genetic deviations that appear are narrow. A low estimate of GCV indicates the population is considered to be similar, with the result that is not effective for selection (Rini
Moderate heritability indicates the traits can be inherited to their offspring although they can still be influenced by environmental changes (Seyoum
The decrease of genetic variance from the previous generation is due to the presence of selfing (Samak
Traits with negative skewness indicate there is duplicate gene action, it concludes at these traits will be effective if the selection is carried out in the advanced generation. Traits with positive skewness indicate there is complementary gene action, it concludes at these traits will be effective if the selection is carried out intensively from the early generation to the advanced generation (Jayaramachandran
Negative skewed indicates there is duplicate epistasis gene action. Duplicate epistasis is an interaction of genes that only occurs if two genes produce the same material to form the same phenotype (Griffiths
Kurtosis < 3 indicates traits are controlled by many genes (Isnaini
The results of the Z skewness and kurtosis test which are not significantly different indicate the data distribution in all traits was close to normal and controlled by many genes with additive gene action. Additive genes action indicates alleles of the parents are inherited to their offspring, so that effect similar traits between the offspring and the parents (Griffiths
Quantitative traits of rice are generally influenced by many genes with the presence of additive and epistatic gene action. A high estimate of GCV with moderate to high heritability which decreased in number of fertile grains indicates high genetic influence than the environment. The presence of additive and epistasis duplicate gene action in number of fertile grains indicates selection will be effective in an advance generation.
This work was carried out with the support of “PNBP project funding” at the Faculty of Agriculture, Brawijaya University, Malang, Indonesia. We sincerely thank to Annisa Zharaura for the great contribution in the project.
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