List of twelve known candidate genes linked to lead SNPs identified by GWAS.
| Lead SNP | -Log10 (P) | Trait | Candidate gene | Gene ID | Description | Ref. |
|---|---|---|---|---|---|---|
| Chr10:23174935 | 29.38 | ReSPAD | Os10g0579600 | Nitrate transporter | (Huang et al. 2018) | |
| Chr03:19112695 | 10.78 | ReRFW |
Os03g0790600 | Transcription factor | (Zhu et al. 2022) | |
| Chr01:1012388 | 10.66 6.52 |
ReRFW ReSFW |
Os01g0103100 | Nitrate transporter | (Tang et al, 2019) | |
| Chr03:5664428 | 8.66 | ReSPAD | Os03g0223400 | Glutamine synthetase | (Tabuchi et al. 2005) | |
| Chr01:37123160 | 7.94 | SPAD | Os01g0872500 | Nitrate transporter | (Wang et al. 2022) | |
| Chr12:3917349 | 7.93 | SPAD | Os12g0194900 | Amino acid permease | (Fang et al. 2021) | |
| Chr02:24491851 | 7.47 6.76 |
ReSFW ReRFW |
Os02g0620600 | Ammonium transporter | (Sonoda et al. 2003) | |
| Chr02:28607552 | 7.44 | SPAD | Os02g0699000 | Nitrate transporter | (Hu et al. 2016) | |
| Chr10:21719487 | 7.33 6.24 |
SFW SL |
Os10g0554200 | Nitrate transporter | (Hu et al. 2015) | |
| Chr11:7816560 | 7.84 7.17 |
ReSL ReRL |
Os11g0235200 | Nitrate transporter | (Li et al. 2009) | |
| Chr02:33539436 | 6.55 | ReSL |
Os02g0797500 | Aminotransferase | (Zhou et al. 2009) | |
| Chr01:7938122 | 6.19 | SFW |
Os01g0236700 | Transcription factor | (Hu et al. 2019) |
