Plant Breeding and Biotechnology : eISSN 2287-9366 / pISSN 2287-9358

Table. 1.

Table. 1.

Crops orthologous genes to Arabidopsis FIGL1, RECQ4, FANCM, and CMT3 genes.

Pathways/Complex Arabidopsis gene Orthologous in major crop plants Increased fold COs rate in mutant form Reference
Crop species Gene/allele
FIGL1 Helicase FIDGETIN-Like Protein 1 (FIGL1) Rice LOC9271031 2-fold increase in in both inbred and hybrid lines Fernandes et al. 2018
Wheat AK331006 7.8-fold in double mutant hybrids (in combination with recq4)
Corn LOC100193153
Tomato LOC101262887
Soybean LOC100789161, LOC100776024
RTR Complex RECQ4A RECQ4B Rice LOC_Os11g48090(A), C_Os04g35420(B) 3-fold in recq4 single mutant de Maagd et al. 2020; Serra et al. 2018
Wheat AK334643 5-fold in recq4a/recq4b double mutants hybrid context
Corn LOC100274706 6-fold in recq4a/recq4b double mutants in inbred context
Tomato LOC101260976 8.8-fold increase in recq4a recq4b fancm in inbred context
Soybean LOC100800006, LOC100817867 4-fold increase in HEI10/recq4a/recq4b mutants
Non-CG methylation CMT3 Rice OsCMT3a (LOC_Os10g01570), OsCMT3b (LOC_Os03g12570) Increased COs in pericentromeric regions Underwood et al. 2017
Wheat AK332918
Corn Zmet2 (GQ923937)
Tomato LOC101265056, LOC101267211
Soybean LOC100799480
Nuclear Core Complex (NC Complex) Fanconi anemia of complementation group M (FANCM) Rice Os11g07870 3-fold in fancm mutant Li et al. 2021; Fernandes et al. 2018; Blary et al. 2018; Girard et al. 2014; Copenhaver et al. 2012
Brassica Brassica.E01856 8.8-fold in triple fancm/recq4a/b in inbred background
Soybean Glyma.08G238200 ∼2-fold in rice (Oryza sativa) and pea (Pisum sativum) hybrids
Medicago truncatula Medtr1g103260
Lettuce Lsat_1_v5_gn_8_141780.1
Plant Breed. Biotech. 2023;11:168-84 https://doi.org/10.9787/PBB.2023.11.3.168
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