Plant Breeding and Biotechnology

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Table. 2.

Table. 2.

List of SNPs used in ‘Fluidigm SNP Genotyping’ assays.

SNP Marker Name Chromosome Location (bp) SNP [Ref/Alt] SNP (color of dye)a)
CMo-A01 1 3,318,442 …CAA[A/G]CCA… A(F):G(H)
CMo-A02 1 9,837,040 …TCT[G/A]AGG… G(F):A(H)
CMo-A03 2 8,873,265 …CTC[A/G]GCA… A(F):G(H)
CMo-A04 2 10,378,972 …GAG[G/A]ATT… G(F):A(H)
CMo-A05 3 5,724,100 …AGC[G/C]CCG… G(F):C(H)
CMo-A06 3 6,119,169 …AGG[T/C]TTA… T(F):C(H)
CMo-A07 4 8,389,880 …CTC[G/A]ATT… G(F):A(H)
CMo-A08 4 20,447,172 …TCC[C/T]TCA… C(F):T(H)
CMo-A09 6 3,712,655 …TTG[G/A]GTC… G(F):A(H)
CMo-A10 6 11,115,368 …TTC[C/T]CTC… C(F):T(H)
CMo-A11 8 2,798,704 …AGG[T/G]TAA… T(F):G(H)
CMo-A12 8 6,252,977 …AAA[C/A]AAA… C(F):A(H)
CMo-A13 10 6,646,259 …GCT[C/T]GAT… C(F):T(H)
CMo-A14 11 4,451,324 …GCC[G/A]AAC… G(F):A(H)
CMo-A15 13 8,296,803 …GAA[C/T]GCG… C(F):T(H)
CMo-A16 15 1,475,799 …TGT[G/C]CAA… G(F):C(H)
CMo-A17 15 9,704,446 …GGG[T/C]GTA… T(F):C(H)
CMo-A18 16 1,782,015 …TAT[G/A]TAG… G(F):A(H)
CMo-A19 16 3,290,808 …TTG[G/T]TGC… G(F):T(H)
CMo-A20 16 8,018,335 …GGG[G/T]AAA… G(F):T(H)
CMo-A21 17 2,812,397 …GAC[G/A]GTC… G(F):A(H)
CMo-A22 17 10,502,431 …TCC[C/T]GTA… C(F):T(H)
CMo-A23 18 1,876,608 …CAG[G/A]TCT… G(F):A(H)
CMo-A24 18 3,666,538 …TTT[C/G]ATG… C(F):G(H)
CMo-A25 18 10,701,307 …TCT[C/G]ACT… C(F):G(H)
CMo-A26 20 3,466,354 …TGC[C/A]AGA… C(F):A(H)
CMo-A27 20 4,075,437 …CTA[G/A]GCT… G(F):A(H)

a)F: FAM dye, H: HEX dye.

Plant Breed. Biotech. 2022;10:163-73 https://doi.org/10.9787/PBB.2022.10.3.163
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