Plant Breeding and Biotechnology

Indexed in /covered by CAS, KoreaScience & DOI/Crossref:eISSN 2287-9366   pISSN 2287-9358

Table. 1.

Table. 1.

Significantly enriched gene ontology terms commonly observed in up- and downregulated differentially expressed gene (DEG) union sets for three types of ionizing radiation.

GO ID GO categoryz) GO term P-value Proportion of DEGs (%)
GR IB PB GR IB PB Ref.
Upregulatedd DEG union sets
GO:0005975 BP Carbohydrate metabolic process 3.80.E-33 4.40.E-22 2.30.E-14 14.12 11.49 11.50 3.46
GO:0006979 BP Response to oxidative stress 3.10.E-13 2.80.E-08 1.10.E-08 4.02 3.00 3.90 0.72
GO:0005976 BP Polysaccharide metabolic process 6.00.E-13 1.80.E-08 6.40.E-07 3.63 2.75 3.08 0.59
GO:0006950 BP Response to stress 4.10.E-11 6.90.E-08 1.60.E-11 8.94 7.74 10.68 3.63
GO:0044042 BP Glucan metabolic process 6.70.E-11 1.10.E-05 2.30.E-04 2.72 1.75 1.85 0.39
GO:0006073 BP Cellular glucan metabolic process 6.70.E-11 1.10.E-05 2.30.E-04 2.72 1.75 1.85 0.39
GO:0050896 BP Response to stimulus 1.60.E-10 3.70.E-07 6.00.E-11 9.72 8.36 11.50 4.26
GO:0044264 BP Cellular polysaccharide metabolic process 2.40.E-10 2.50.E-05 4.00.E-04 2.72 1.75 1.85 0.43
GO:0042221 BP Response to chemical stimulus 5.60.E-09 2.40.E-05 2.20.E-06 4.27 3.25 4.31 1.25
GO:0006629 BP Lipid metabolic process 3.60.E-06 1.80.E-04 3.10.E-04 5.05 4.37 4.93 2.19
GO:0044092 BP Negative regulation of molecular function 9.90.E-06 6.90.E-05 3.30.E-04 1.42 1.25 1.44 0.25
GO:0043086 BP Negative regulation of catalytic activity 9.90.E-06 6.90.E-05 3.30.E-04 1.42 1.25 1.44 0.25
GO:0006952 BP Defense response 1.10.E-05 2.20.E-05 1.40.E-06 4.40 4.24 5.54 1.88
GO:0019953 BP Sexual reproduction 1.10.E-05 1.30.E-05 5.50.E-07 0.91 0.87 1.44 0.08
GO:0006468 BP Protein amino acid phosphorylation 1.10.E-05 1.60.E-12 8.80.E-03 10.75 13.61 9.45 6.52
GO:0071554 BP Cell wall organization or biogenesis 1.60.E-05 7.30.E-06 9.50.E-07 2.20 2.25 3.08 0.61
GO:0006869 BP Lipid transport 6.60.E-05 1.40.E-06 8.60.E-08 1.68 2.00 2.87 0.43
GO:0010876 BP Lipid localization 6.60.E-05 1.40.E-06 8.60.E-08 1.68 2.00 2.87 0.43
GO:0016265 BP Death 1.60.E-04 7.30.E-05 1.10.E-03 4.53 4.62 4.72 2.26
GO:0008219 BP Cell death 1.60.E-04 7.30.E-05 1.10.E-03 4.53 4.62 4.72 2.26
GO:0016052 BP Carbohydrate catabolic process 1.80.E-04 7.70.E-05 6.60.E-03 1.81 1.87 1.64 0.54
GO:0012501 BP Programmed cell death 2.20.E-04 2.10.E-04 7.90.E-04 4.40 4.37 4.72 2.21
GO:0006915 BP Apoptosis 2.20.E-04 2.10.E-04 7.90.E-04 4.40 4.37 4.72 2.21
GO:0000272 BP Polysaccharide catabolic process 3.80.E-04 8.40.E-05 1.90.E-04 0.91 1.00 1.23 0.15
GO:0006026 BP Aminoglycan catabolic process 4.00.E-04 9.60.E-06 3.40.E-05 0.78 1.00 1.23 0.11
GO:0006030 BP Chitin metabolic process 4.00.E-04 9.60.E-06 3.40.E-05 0.78 1.00 1.23 0.11
GO:0006032 BP Chitin catabolic process 4.00.E-04 9.60.E-06 3.40.E-05 0.78 1.00 1.23 0.11
GO:0071555 BP Cell wall organization 6.30.E-04 2.90.E-03 2.10.E-03 1.30 1.12 1.44 0.34
GO:0006022 BP Aminoglycan metabolic process 6.60.E-04 1.90.E-05 5.90.E-05 0.78 1.00 1.23 0.12
GO:0016998 BP Cell wall macromolecule catabolic process 7.50.E-04 3.20.E-05 5.80.E-06 0.91 1.12 1.64 0.17
GO:0050790 BP Regulation of catalytic activity 8.60.E-04 3.50.E-03 4.10.E-03 1.55 1.37 1.64 0.50
GO:0065009 BP Regulation of molecular function 9.20.E-04 3.70.E-03 4.30.E-03 1.55 1.37 1.64 0.50
GO:0044036 BP Cell wall macromolecule metabolic process 1.10.E-03 5.20.E-05 9.10.E-06 0.91 1.12 1.64 0.19
GO:0033036 BP Macromolecule localization 5.10.E-03 5.20.E-04 1.10.E-03 3.11 3.50 3.90 1.71
GO:0004553 MF Hydrolase activity, hydrolyzing O-glycosyl compounds 1.90.E-29 1.80.E-20 4.30.E-19 9.59 7.74 9.45 1.76
GO:0016798 MF Hydrolase activity, acting on glycosyl bonds 8.20.E-28 7.60.E-20 1.50.E-18 9.84 8.11 9.86 1.99
GO:0016684 MF Oxidoreductase activity, acting on peroxide as acceptor 7.90.E-13 5.40.E-08 2.10.E-08 4.02 3.00 3.90 0.75
GO:0004601 MF Peroxidase activity 7.90.E-13 5.40.E-08 2.10.E-08 4.02 3.00 3.90 0.75
GO:0016209 MF Antioxidant activity 2.40.E-12 3.70.E-07 2.30.E-08 4.15 3.00 4.11 0.84
GO:0016491 MF Oxidoreductase activity 1.10.E-09 1.00.E-06 1.00.E-09 13.21 11.74 14.99 6.94
GO:0005515 MF Protein binding 1.20.E-09 6.70.E-09 2.60.E-03 17.49 16.98 14.37 10.22
GO:0032555 MF Purine ribonucleotide binding 3.70.E-09 3.40.E-15 2.00.E-03 21.50 24.22 18.48 13.67
GO:0032553 MF Ribonucleotide binding 3.70.E-09 3.40.E-15 2.00.E-03 21.50 24.22 18.48 13.67
GO:0017076 MF Purine nucleotide binding 4.50.E-09 1.60.E-15 1.80.E-03 22.28 25.22 19.30 14.36
GO:0016762 MF Xyloglucan:xyloglucosyl transferase activity 3.30.E-08 1.50.E-04 7.10.E-06 1.42 0.87 1.44 0.12
GO:0005507 MF Copper ion binding 4.50.E-08 5.50.E-06 1.40.E-10 2.59 2.12 3.90 0.54
GO:0005524 MF ATP binding 5.20.E-08 3.00.E-14 1.50.E-03 19.82 22.72 17.66 12.81
GO:0032559 MF Adenyl ribonucleotide binding 5.40.E-08 3.20.E-14 1.50.E-03 19.82 22.72 17.66 12.82
GO:0030554 MF Adenyl nucleotide binding 5.80.E-08 1.40.E-14 1.30.E-03 20.60 23.72 18.48 13.49
GO:0001883 MF Purine nucleoside binding 5.80.E-08 1.40.E-14 1.30.E-03 20.60 23.72 18.48 13.49
GO:0001882 MF Nucleoside binding 7.10.E-08 1.80.E-14 1.50.E-03 20.60 23.72 18.48 13.53
GO:0020037 MF Heme binding 7.50.E-08 5.70.E-05 6.60.E-09 6.09 4.99 7.60 2.49
GO:0046906 MF Tetrapyrrole binding 1.10.E-07 7.40.E-05 9.20.E-09 6.09 4.99 7.60 2.53
GO:0003824 MF Catalytic activity 1.10.E-07 3.10.E-07 1.40.E-03 62.31 61.80 59.75 52.85
GO:0005506 MF Iron ion binding 6.60.E-07 3.40.E-05 5.50.E-08 6.48 5.74 8.01 2.96
GO:0004672 MF Protein kinase activity 1.20.E-05 1.90.E-12 9.30.E-03 10.75 13.61 9.45 6.54
GO:0042802 MF Identical protein binding 2.80.E-05 1.80.E-04 6.60.E-04 1.42 1.25 1.44 0.28
GO:0004650 MF Polygalacturonase activity 2.20.E-04 5.70.E-03 3.10.E-03 1.04 0.75 1.03 0.19
GO:0000287 MF Magnesium ion binding 2.20.E-04 9.60.E-04 1.50.E-04 1.81 1.62 2.26 0.56
GO:0004568 MF Chitinase activity 4.00.E-04 9.60.E-06 3.40.E-05 0.78 1.00 1.23 0.11
GO:0004867 MF Serine-type endopeptidase inhibitor activity 1.20.E-03 1.50.E-03 1.70.E-08 1.04 1.00 2.46 0.25
GO:0003993 MF Acid phosphatase activity 3.20.E-03 3.80.E-03 2.10.E-03 0.78 0.75 1.03 0.17
GO:0004866 MF Endopeptidase inhibitor activity 3.40.E-03 4.20.E-03 1.00.E-07 1.04 1.00 2.46 0.30
GO:0030414 MF Peptidase inhibitor activity 3.40.E-03 4.20.E-03 1.00.E-07 1.04 1.00 2.46 0.30
GO:0016829 MF Lyase activity 7.30.E-03 2.50.E-03 2.20.E-03 2.46 2.62 3.08 1.28
GO:0005576 CC Extracellular region 2.20.E-11 3.00.E-09 7.60.E-14 4.40 3.87 6.16 1.04
GO:0005618 CC Cell wall 1.70.E-09 1.10.E-05 1.40.E-05 2.33 1.62 2.05 0.34
GO:0030312 CC External encapsulating structure 6.40.E-08 1.30.E-04 1.20.E-04 2.33 1.62 2.05 0.44
GO:0048046 CC Apoplast 3.40.E-07 4.50.E-05 8.50.E-06 2.07 1.62 2.26 0.39
Downregulated DEG union sets
GO:0043412 BP Macromolecule modification 9.90.E-06 3.50.E-05 4.70.E-03 17.82 15.08 12.75 8.22
GO:0006464 BP Protein modification process 1.40.E-05 3.70.E-05 8.80.E-03 17.33 14.77 12.09 8.01
GO:0006950 BP Response to stress 7.60.E-03 2.00.E-04 4.40.E-04 7.43 8.00 7.84 3.63
GO:0005524 MF ATP binding 1.60.E-08 6.40.E-10 1.60.E-03 27.72 25.54 18.95 12.81
GO:0032559 MF Adenyl ribonucleotide binding 1.60.E-08 6.60.E-10 1.60.E-03 27.72 25.54 18.95 12.82
GO:0030554 MF Adenyl nucleotide binding 3.60.E-08 1.40.E-09 1.90.E-03 28.22 26.15 19.61 13.49
GO:0001883 MF Purine nucleoside binding 3.60.E-08 1.40.E-09 1.90.E-03 28.22 26.15 19.61 13.49
GO:0001882 MF Nucleoside binding 4.00.E-08 1.60.E-09 2.10.E-03 28.22 26.15 19.61 13.53
GO:0032555 MF Purine ribonucleotide binding 5.80.E-08 5.00.E-10 1.70.E-03 28.22 26.77 19.93 13.67
GO:0032553 MF Ribonucleotide binding 5.80.E-08 5.00.E-10 1.70.E-03 28.22 26.77 19.93 13.67
GO:0000166 MF Nucleotide binding 8.80.E-08 6.10.E-09 6.30.E-05 31.19 28.92 24.84 16.09
GO:0017076 MF Purine nucleotide binding 1.20.E-07 1.10.E-09 2.00.E-03 28.71 27.38 20.59 14.36

z)BP: biological process, MF: molecular function, CC: cellular component.

Plant Breed. Biotech. 2021;9:213-26 https://doi.org/10.9787/PBB.2021.9.3.213
© 2021 Plant Breed. Biotech.