Plant Breeding and Biotechnology

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Table. 3.

Table. 3.

Haplotype analysis of Rd and C1 using the Korean rice core set (KRICE_CORE).

Haplotypez) (phenotype) Rd C1 Total Sterile lemma and apiculus color
276y) 4 51 122 277 360 786 795 844 918 1010 1012 Jap Ind Aus Aro Adm
H1 (3) C G G C G GAG TC ACTGG AACAG C C G G 25 12 (8)v) 5
H2 (3) - - - - - - - - T - - - 1 1
H3 (3) - - - - - - - - - A (P→Q) - - 1 1
H4 (1) - - - - - - ‒2 bp - - - - - 2 2
H5 (1) - T (Gx)→W) - - - - - - - - - - 1 1
H6 (1) - - A (Stop) - - - - - - - - - 1 1
H7 (1) - - - - - - - ‒10 bp - - - - 25 2 20 (2) 1
H8 (1) - - - G (P→R) - - - - - - - - 3 2 (1)
H9 (1) - - - - A (R→Q) - - - - - - - 3 3
H10 (1) - - - - - ‒3 bp - - - - - - 3 3
H11 (1) - - - - - - - - - - C (A→P) T 3 3
H12 (1) A (Stop) - - - - - - - - - - - 4 2 2
H13 (1) A (Stop) - - - A (R→Q) - - - - - - - 1 1
H14 (1) A (Stop) - - - - ‒3 bp - - - - - - 5 5
Amino acidw) Ps Ns Ps Ns Ns Del Del Del S Ns Ns S

z)Josaengjado in H1 and Daeribbyeo 1 in H14. In parentheses, 3 indicates purple sterile lemma and apiculus with 1 indicating straw-white sterile lemma and apiculus.

y)Nucleotide position, x)G: glycine, W: tryptophan, P: proline, R: arginine, Q: glutamine, A: alanine, Stop: stop codon. w)Ps: premature stop, Ns: non-synonymous, Del: deletion, S: synonymous. v)In parentheses, the number of lines that show different phenotype expected from the genotype.

Plant Breed. Biotech. 2020;8:378-88 https://doi.org/10.9787/PBB.2020.8.4.378
© 2020 Plant Breed. Biotech.